View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15970_high_15 (Length: 232)
Name: NF15970_high_15
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 38300432 - 38300232
Alignment:
| Q |
17 |
caacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300432 |
caacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgc |
38300333 |
T |
|
| Q |
117 |
cgatatttaagagcactttcaagcattgaataagttgtgttcactcttttaggcgtgtccagatgcaagcgaacggaacaatcaacaccaccaacctttg |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38300332 |
cgatatttaagagcactttcaagcattgaataagttgagttcactcttttaggcgtgtccagatgcaagcgaacggaacaatcaacaccaccaacctttg |
38300233 |
T |
|
| Q |
217 |
c |
217 |
Q |
| |
|
| |
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|
| T |
38300232 |
c |
38300232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 38321177 - 38320979
Alignment:
| Q |
17 |
caacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgc |
116 |
Q |
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||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | |
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| T |
38321177 |
caacaagaacacacaaatcttttcaactcttttccattcttctaccgaaggacataactcataattatcatcatacaagtgaagactttcaaacacacac |
38321078 |
T |
|
| Q |
117 |
cgatatttaagagcactttcaagcattgaataagttgtgttcactcttttaggcgtgtccagatgcaagcgaacggaacaatcaacaccaccaaccttt |
215 |
Q |
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| T |
38321077 |
ctatatttaagagcactttcaagcatcaaataagttgagttcacagtcatagacatgtccagatgcaagcgaactgaactatcaacaccaccaaccttt |
38320979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 38325927 - 38325729
Alignment:
| Q |
17 |
caacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgc |
116 |
Q |
| |
|
||||||||| |||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||| |
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| T |
38325927 |
caacaagaatgcacagatcttttctactcttttctactcttctaccgaaggacataactcataattatcctcatacaagtgaagactttcaaacacacgc |
38325828 |
T |
|
| Q |
117 |
cgatatttaagagcactttcaagcattgaataagttgtgttcactcttttaggcgtgtccagatgcaagcgaacggaacaatcaacaccaccaaccttt |
215 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||| ||||| || ||| || |||| |||||||||||||||||| ||| ||||||||||||||| |
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| T |
38325827 |
cgatatttaagagcactttcaagcatcaaataagttgagttcagactcatagacgagtcctgatgcaagcgaacggaactatcgacaccaccaaccttt |
38325729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 38313672 - 38313475
Alignment:
| Q |
18 |
aacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgcc |
117 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| |||||| ||| ||||||| | ||||| |||||||||||||||||||||||||||| ||||| |
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| T |
38313672 |
aacaagaatgcacaaatcttttctactcttttccagtcttctgccgcaggacatgaatcataatcatcatcatacaagtgaagactttcaaacgcacgct |
38313573 |
T |
|
| Q |
118 |
gatatttaagagcactttcaagcattgaataagttgtgttcactcttttaggcgtgtccagatgcaagcgaacggaacaatcaacaccaccaaccttt |
215 |
Q |
| |
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|||||||||||||||||| |||||| ||||||||| ||||||||| ||| | | || |||||||||||||| |||| ||||||||||||||||||| |
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| T |
38313572 |
gatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatatctagatgcaagcgaaccgaactatcaacaccaccaaccttt |
38313475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 38309079 - 38308881
Alignment:
| Q |
17 |
caacaagaacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgc |
116 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||| ||| ||||||| | |||||| ||| ||||||||||||||||||||||| || || |
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| T |
38309079 |
caacaagaatgcacaaatcttttctactcttttccactcttctgccgcaggacatgaatcataaccatcgtcatacaagtgaagactttcaaatgcaagc |
38308980 |
T |
|
| Q |
117 |
cgatatttaagagcactttcaagcattgaataagttgtgttcactcttttaggcgtgtccagatgcaagcgaacggaacaatcaacaccaccaaccttt |
215 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||| ||||||||| ||| | |||| |||||||| ||||| |||| ||||||||||||||||||| |
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| T |
38308979 |
tgatatttaagagcactttgaagcatcaaataagttgagttcactctcatagacatgtctagatgcaaacgaacagaactatcaacaccaccaaccttt |
38308881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 215
Target Start/End: Complemental strand, 38317079 - 38316884
Alignment:
| Q |
20 |
caagaacacacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccga |
119 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||| | | | ||||||||||| ||| |||||||||||||||||| ||||||||| ||| ||||| |
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| T |
38317079 |
caagaacgcacaaatcttttcaactcttttccactcatgtgctaaaggacataactggtaattatcatcatacaagtgaaaactttcaaatacatgccga |
38316980 |
T |
|
| Q |
120 |
tatttaagagcactttcaagcattgaataagttgtgttcactcttttaggcgtgtccagatgcaagcgaacggaacaatcaacaccaccaaccttt |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||| || ||| | |||||||||||| || ||| |||| ||||||||||||||||||| |
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| T |
38316979 |
tatttaagagcactttcaagcatcacataagttgagttcagactcatagacatgtccagatgcaggcaaacagaactatcaacaccaccaaccttt |
38316884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 44 - 215
Target Start/End: Complemental strand, 38306324 - 38306153
Alignment:
| Q |
44 |
tcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaagagcactttcaagcatt |
143 |
Q |
| |
|
|||||||||||||| | | |||||||| | |||||| | ||||||||||||||| ||||||||||||| | |||||||||||||||| || ||||| |
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| T |
38306324 |
tcttttccactcttttgcagaaggacacgagacataatcaccatcatacaagtgaaaactttcaaacacatgttgatatttaagagcactatcgagcatc |
38306225 |
T |
|
| Q |
144 |
gaataagttgtgttcactcttttaggcgtgtccagatgcaagcgaacggaacaatcaacaccaccaaccttt |
215 |
Q |
| |
|
||||||||| |||||| | ||| | |||||| |||||||||||| |||| |||| ||||||||||||| |
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|
| T |
38306224 |
aaataagttgagttcacagtcatagacatgtccatatgcaagcgaactgaactgtcaataccaccaaccttt |
38306153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 38850274 - 38850387
Alignment:
| Q |
28 |
cacaaatcttttgtactcttttccactcttctaccgaaggacataacacataactatcatcatacaagtgaagactttcaaacacacgccgatatttaag |
127 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||| ||| ||| |||||||| |
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| T |
38850274 |
cacaaatcttttctactcttttccactcttccgccgaaggacataaatcataactatcatcatacaagtgaaaactttcaaacgcacaccggtatttaag |
38850373 |
T |
|
| Q |
128 |
agcactttcaagca |
141 |
Q |
| |
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||| |||||||||| |
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|
| T |
38850374 |
agctctttcaagca |
38850387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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