View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15970_high_3 (Length: 568)
Name: NF15970_high_3
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 503
Target Start/End: Original strand, 45341602 - 45342084
Alignment:
| Q |
19 |
aactataacaacaaattaatacactcatgaatattgaataaataaatttcttaatcagcaaaatgaacacacagattcaaggaaaagacaaatctctaga |
118 |
Q |
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| T |
45341602 |
aactataacaacaaattaatacactcatgaatattgaataaataaatttcttaatcagcaaaatgaacacacagattcaagaaaaagacaaatctctaga |
45341701 |
T |
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| Q |
119 |
aaacaaaaataatcattcttccaaatttaatgaataaatacaaacaaatttgtaatgattaagtttaaaaggtactagaattaaacaagctaaggaaagt |
218 |
Q |
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| T |
45341702 |
aaagaaaaataatcattctcccaaatttaatgaataaatacaaacaaatttgtaatgattaagtttaaaaggtactagaattaaac-----aaggaaagt |
45341796 |
T |
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| Q |
219 |
aaaaattaccagaatgaggaagaagtttacgatgaggtgtatgaatgagtgtgta---nnnnnnnnnnnnnnnnnnaccttcttcctcaaaccccaacaa |
315 |
Q |
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| T |
45341797 |
aaaaattaccagaatgaggaagaagtttacgatgaggtgtatgaatgagtgtgtagttgttgttgttgttgtcgataccttcttcctcaaaccccaacaa |
45341896 |
T |
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| Q |
316 |
atacgacaaagacatcaacgttccagtacgagccccaccaccaccaccaaatcccaatcctgtagtaacggtacgcataacgacaaaaacaaacaaatgt |
415 |
Q |
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| T |
45341897 |
atacgacaaagacatcaacgttccagtacgagccccaccaccaccaccaaatcccaatcctgtaataacggtacgcataacgacaaaaacaaacaaatgt |
45341996 |
T |
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| Q |
416 |
tcaatatacgattcaacaaacatacatacgcacataaccgaaaaaatagcataacaacaccactacactgaaacaacgattcaatcat |
503 |
Q |
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| T |
45341997 |
tcaatatacgattcaacaaacatacatacgcacataaccgaaaaaatagcataacaacaccactacactgaaacaacgattcaatcat |
45342084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 498 - 551
Target Start/End: Original strand, 45342116 - 45342169
Alignment:
| Q |
498 |
aatcatagcaatagcaatgaatctacaaattaacagtgatttttggaaagagaa |
551 |
Q |
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| T |
45342116 |
aatcatagcaatagcaatgaatctacaaattaacagtgatttttggaaagagaa |
45342169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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