View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15970_high_5 (Length: 407)
Name: NF15970_high_5
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 17 - 392
Target Start/End: Complemental strand, 14196083 - 14195703
Alignment:
| Q |
17 |
attttactgtcgtaataaaaatatcgatcccatagaaaatgtgaatctcaacactatcttgttctcctcagtgtgccaataaaaagtagtatttttggat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14196083 |
attttactgtcgtaataaaaatatcgatcccacagaaaatgtgaatctcgacactattttgttctcctcagtgtgccaataaatagtagtatttttggat |
14195984 |
T |
|
| Q |
117 |
ttttatgagataaatgattgcaaatattttagagatatgcaatgataataaggccttggaatcattgcatcattataactatcattccagatcctattca |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| |
|
|
| T |
14195983 |
ttttatgagataaatgattgcaaatattttagagatatgcaatgataataaggccttggaatcattgcatcattattactatcagtccagatcgtattca |
14195884 |
T |
|
| Q |
217 |
attcttttgccttcgaaatgcagacctaaggatgagattttttcttttgtatcactgaccatg-----nnnnnnnnnaaggatcactgaccacgttttta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||| |
|
|
| T |
14195883 |
attcttttgccttcgaaatgcagacctaaggatgagattttttcttttgtatcattgaccatgttttttttttttttaaggatcactgaccatgttttta |
14195784 |
T |
|
| Q |
312 |
acaataatgaagcgtctaatcaaaacgtctcccttagtatggtgggaaaatctttcattgacacaatcacaaatcaatttt |
392 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
14195783 |
gcaataatgaagcgtctcatcaatacgtctcccttagcatggtgagaaaatctttcatggacacaatcacaaatcaatttt |
14195703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 389
Target Start/End: Original strand, 7232425 - 7232457
Alignment:
| Q |
357 |
gaaaatctttcattgacacaatcacaaatcaat |
389 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
7232425 |
gaaaatctttcatggacacaatcacaaatcaat |
7232457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University