View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15970_low_1 (Length: 698)
Name: NF15970_low_1
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 385; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 265 - 680
Target Start/End: Original strand, 20203199 - 20203608
Alignment:
| Q |
265 |
catgggaatatcaagtttaatgaatgtgtttggaaaaaatttcactgttcttagatctggtggataacctgtgaagcctggtggtccgatacggattcgc |
364 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203199 |
catgggaatatcaagtttaatgaatgtgtttggaaaaaatttcactgttcttagatctggtggataacctgtgaagcctggtggtccgatacggattcgc |
20203298 |
T |
|
| Q |
365 |
agttgattgagtacggttgaaacagttattaaatcagtgcgaaaagcttgttggttttgcaggatttcattcatggtgtaaattaggtcagccatggaag |
464 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20203299 |
agttgattgagtacggttgaaacagttattaaatcagtgcgaaaagcttgttggttttgcaggatttcattcatggtgtaaattaggtcagccatggaag |
20203398 |
T |
|
| Q |
465 |
gaggtgggggaggtggatccatagcaatgaaagcaccaatgtaaggtactctcttataacaaagaggaagaggataaatgaaatgtaaggaataaaaata |
564 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20203399 |
gaggtgggggaggtggatccatagcaatgaaagcaccaatgtaaggtactctcttataaca------aagaggataaatgaaatgtaaggaataaaaata |
20203492 |
T |
|
| Q |
565 |
ggcttcgtgagtggagtagatttaatgattgaacaattatttctgtacctttatttcataaaacattccaatacatataggataagaactcaatcgtagt |
664 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
20203493 |
ggcttcgtgagtggagtagatttaatgattgaacaattatttctgtacctttatttcataaaacattccaatacatataggataagaattcaatcctagt |
20203592 |
T |
|
| Q |
665 |
actaaggggcagctat |
680 |
Q |
| |
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|||||||||||||||| |
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|
| T |
20203593 |
actaaggggcagctat |
20203608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 265 - 680
Target Start/End: Original strand, 22097222 - 22097631
Alignment:
| Q |
265 |
catgggaatatcaagtttaatgaatgtgtttggaaaaaatttcactgttcttagatctggtggataacctgtgaagcctggtggtccgatacggattcgc |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097222 |
catgggaatatcaagtttaatgaatgtgtttggaaaaaatttcactgttcttagatctggtggataacctgtgaagcctggtggtccgatacggattcgc |
22097321 |
T |
|
| Q |
365 |
agttgattgagtacggttgaaacagttattaaatcagtgcgaaaagcttgttggttttgcaggatttcattcatggtgtaaattaggtcagccatggaag |
464 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22097322 |
agttgattgagtacggttgaaacagttattaaatcagtgcgaaaagcttgttggttttgcaggatttcattcatggtgtaaattaggtcagccatggaag |
22097421 |
T |
|
| Q |
465 |
gaggtgggggaggtggatccatagcaatgaaagcaccaatgtaaggtactctcttataacaaagaggaagaggataaatgaaatgtaaggaataaaaata |
564 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
22097422 |
gaggtgggggaggtggatccatagcaatgaaagcaccaatgtaaggtactctcttataaca------aagaggataaatgaaatgtaaggaataaaaata |
22097515 |
T |
|
| Q |
565 |
ggcttcgtgagtggagtagatttaatgattgaacaattatttctgtacctttatttcataaaacattccaatacatataggataagaactcaatcgtagt |
664 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
22097516 |
ggcttcgtgagtggagtagatttaatgattgaacaattatttctgtacctttatttcataaaacattccaatacatataggataagaattcaatcctagt |
22097615 |
T |
|
| Q |
665 |
actaaggggcagctat |
680 |
Q |
| |
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|||||||||||||||| |
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|
| T |
22097616 |
actaaggggcagctat |
22097631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 20202855 - 20203108
Alignment:
| Q |
12 |
gagatgaaacaacttaagtaacattgtaggcgaaggccaataatgcgatttgctaaagtttaaacacgagattggtagttttgaactgtggtggtttgac |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20202855 |
gagatgaaacaacttaagtaacattgtaggcgaaggccaataatgcgatttgctaaagtttaaacacgagattggtagttttgaactgtggtggtttgac |
20202954 |
T |
|
| Q |
112 |
agagtttgtagagagtgccatttggatcttcaaagtatgaaggggaaaaaggcagttcaagagcatggagaatagtaggtcaagaatgaagctaagcatt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
20202955 |
agagtttgtagagagtgccatttggatcttcaaagtatgaaggggaaaaaggcagttcaagagcatggagaatagtaggtcaagaatgaagctaaccatt |
20203054 |
T |
|
| Q |
212 |
agagtgcatccaatggcaccacgtgagggcatctccttcaatgtagaatgatgc |
265 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
20203055 |
agagtgcatccaatggcaccacgtgagggcatctccttccatgtagaatgatgc |
20203108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 265
Target Start/End: Original strand, 22096878 - 22097131
Alignment:
| Q |
12 |
gagatgaaacaacttaagtaacattgtaggcgaaggccaataatgcgatttgctaaagtttaaacacgagattggtagttttgaactgtggtggtttgac |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22096878 |
gagatgaaacaacttaagtaacattgtaggcgaaggccaataatgcgatttgctaaagtttaaacacgagattggtagttttgaactgtggtggtttgac |
22096977 |
T |
|
| Q |
112 |
agagtttgtagagagtgccatttggatcttcaaagtatgaaggggaaaaaggcagttcaagagcatggagaatagtaggtcaagaatgaagctaagcatt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22096978 |
agagtttgtagagagtgccatttggatcttcaaagtatgaaggggaaaaaggcagttcaagagcatggagaatagtaggtcaagaatgaagctaaccatt |
22097077 |
T |
|
| Q |
212 |
agagtgcatccaatggcaccacgtgagggcatctccttcaatgtagaatgatgc |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
22097078 |
agagtgcatccaatggcaccacgtgagggcatctccttccatgtagaatgatgc |
22097131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 544 - 672
Target Start/End: Original strand, 20193544 - 20193672
Alignment:
| Q |
544 |
gaaatgtaaggaataaaaataggcttcgtgagtggagtagatttaatgattgaacaattatttctgtacctttatttcataaaacattccaatacatata |
643 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
20193544 |
gaaatgcaaggaataaaaataggctccgtgagtggagtagactcaatgattcaacaattatttctctgcctttatttcataaaacattccaatacatata |
20193643 |
T |
|
| Q |
644 |
ggataagaactcaatcgtagtactaaggg |
672 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
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|
| T |
20193644 |
ggataagaactcaatcctagtactaaggg |
20193672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 544 - 672
Target Start/End: Original strand, 22087567 - 22087695
Alignment:
| Q |
544 |
gaaatgtaaggaataaaaataggcttcgtgagtggagtagatttaatgattgaacaattatttctgtacctttatttcataaaacattccaatacatata |
643 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| | ||||||| ||||||||||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
22087567 |
gaaatgcaaggaataaaaataggctccgtgagtggagtagactcaatgattcaacaattatttctctgcctttatttcataaaacattccaatacatata |
22087666 |
T |
|
| Q |
644 |
ggataagaactcaatcgtagtactaaggg |
672 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
|
|
| T |
22087667 |
ggataagaactcaatcctagtactaaggg |
22087695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 546 - 632
Target Start/End: Original strand, 34703539 - 34703623
Alignment:
| Q |
546 |
aatgtaaggaataaaaataggcttcgtgagtggagtagatttaatgattgaacaattatttctgtacctttatttcataaaacattc |
632 |
Q |
| |
|
|||| |||||||||||||| ||| | |||||||||||| | ||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
34703539 |
aatgcaaggaataaaaataagctccccgagtggagtagactcaatgattgaacaattatttctgt--ctttatttcataaaacattc |
34703623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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