View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15970_low_10 (Length: 320)
Name: NF15970_low_10
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 31379549 - 31379253
Alignment:
| Q |
14 |
ttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttctcctcaaggtcttcgataggttctttgttcagaatgtttgtca |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
31379549 |
ttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttctcctcaaggtctttgataggttctttgttcagcatgtttgtca |
31379450 |
T |
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| Q |
114 |
tgaagttgggattcaccagcaccaattgagagtgttcatannnnnnngcatgccctaaaggaatttgaatgaactttgaattttggtgcttaagctcctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31379449 |
tgaagttgggattcaccagcaccaattgagagtgttcatatttttttgcatgccctaaaggaatttgaatgaactttgaattttggtgcttaagctcctt |
31379350 |
T |
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| Q |
214 |
cacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaattgttgtgaatccatgctattgatagcacttgaagtatta |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31379349 |
cacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaattgttgtgaatccatgctattgatagcacttgaagtatta |
31379253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 14 - 310
Target Start/End: Complemental strand, 31330767 - 31330471
Alignment:
| Q |
14 |
ttgtacacataggaaaaatccttctcaaacccgccgttcaccataagatttgttttctcctcaaggtcttcgataggttctttgttcagaatgtttgtca |
113 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
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| T |
31330767 |
ttgtacacataggaaaaatccttctcaaacccaccgttcaccataagatttgttttctcctcaaggtctttgataggttctttgttcagcatgtttgtca |
31330668 |
T |
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| Q |
114 |
tgaagttgggattcaccagcaccaattgagagtgttcatannnnnnngcatgccctaaaggaatttgaatgaactttgaattttggtgcttaagctcctt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31330667 |
tgaagttgggattcaccagcaccaattgagagtgttcatatttttttgcatgccctaaaggaatttgaatgaactttgaattttggtgcttaagctcctt |
31330568 |
T |
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| Q |
214 |
cacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaattgttgtgaatccatgctattgatagcacttgaagtatta |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31330567 |
cacacaagtctccaatttttctatcatactgccaatatctgtactactgatcaccaattgttgtgaatccatgctattgatagcacttgaagtatta |
31330471 |
T |
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