View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15970_low_11 (Length: 301)
Name: NF15970_low_11
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 3659123 - 3658850
Alignment:
| Q |
11 |
cacagacaaaagggaaaatgtttataatcgatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaataccc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3659123 |
cacacacaaaagggaaaatgtttataatcgatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaataccc |
3659024 |
T |
|
| Q |
111 |
aacccttctctcatatcaacaacttcatccattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3659023 |
aacccttctctcatatcaacaacttcatccattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaaca |
3658924 |
T |
|
| Q |
211 |
acgatccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttct |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3658923 |
acgatccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttct |
3658850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 40 - 284
Target Start/End: Complemental strand, 7843348 - 7843104
Alignment:
| Q |
40 |
gatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaatacccaacccttctctcatatcaacaacttcatc |
139 |
Q |
| |
|
||||||||||| | | |||||| ||||||||||||||||||||||||||||||||||| || || || ||||| |||||||||||||||||||||||||| |
|
|
| T |
7843348 |
gatagagttcaaagggtaatcgtggggtcaaaacaacttgcaatggagttaacttaggtaaagttattcccaaaccttctctcatatcaacaacttcatc |
7843249 |
T |
|
| Q |
140 |
cattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaacaacgatccaggacaagctcttctccctaat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || ||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7843248 |
cattggcacttccaaatcaaacccatgaagaagacatgcaagtgtaatgagactattttgtgtagcaaacaaagatccaggacaagctcttctccctaat |
7843149 |
T |
|
| Q |
240 |
ccaaaaggaaggtactcaaaatggtgactttcatgatcaatttct |
284 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7843148 |
ccaaaaggaaggtactcaaaatgatgactttcatgatcaatttct |
7843104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University