View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15970_low_14 (Length: 284)
Name: NF15970_low_14
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 8e-67; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 30071430 - 30071598
Alignment:
| Q |
1 |
aagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtttggtttgggtgaagtacgtaacaaggttgaagactatacaacaa |
100 |
Q |
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| T |
30071430 |
aagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtttggtttggctgaagtacgtaacaaggttgaagactatacaacta |
30071529 |
T |
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| Q |
101 |
caagttgatctcatattatcttgca-acggtggtgtacgtgtttgg-ttgtatatgtagtgagatattt |
167 |
Q |
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| T |
30071530 |
caagttgatctcttattatcttgaagccggtggtgtacgtgtttggtttgtatatctagtgagatattt |
30071598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 30005554 - 30005405
Alignment:
| Q |
1 |
aagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtttggtttgggtgaagtacgtaacaaggttgaagac--tatacaac |
98 |
Q |
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| T |
30005554 |
aagaaaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatgctttggtttggctgaagtacgtaacaaggttgaagactatatagaac |
30005455 |
T |
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| Q |
99 |
aacaagttgatctcatattatcttgcaa-cggtggtgtacgtgtttggtt |
147 |
Q |
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| T |
30005454 |
tccaagttaatctcagattatcttgaaaccggtggtgtacgtgtttggtt |
30005405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 29990408 - 29990352
Alignment:
| Q |
5 |
aaagcaaacattgttgttgttagtgcaaaagacatgtctacaatgaatggtttggtt |
61 |
Q |
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| T |
29990408 |
aaagcaaatattgttgttgttactgcaaaagacatgtctacaatgaatggtttggtt |
29990352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 30045600 - 30045661
Alignment:
| Q |
1 |
aagaaaagcaaacattgttgttgttagtgcaaaagacatgtctac-aatgaatggtttggtt |
61 |
Q |
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| T |
30045600 |
aagaaaagcaaatattattgttgttactgcaaaagacatgtctacaaatgaatggttgggtt |
30045661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 188
Target Start/End: Original strand, 30071609 - 30071645
Alignment:
| Q |
152 |
atgtagtgagatatttatggcggccatactatatact |
188 |
Q |
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| T |
30071609 |
atgtattgagatatttatggcggccatactatatact |
30071645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 73
Target Start/End: Complemental strand, 29943554 - 29943509
Alignment:
| Q |
28 |
tgcaaaagacatgtctacaatgaatggtttggtttgggtgaagtac |
73 |
Q |
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| T |
29943554 |
tgcagaagacatctctacaatgaatggtttggtttggatcaagtac |
29943509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 72
Target Start/End: Complemental strand, 29999092 - 29999048
Alignment:
| Q |
28 |
tgcaaaagacatgtctacaatgaatggtttggtttgggtgaagta |
72 |
Q |
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| T |
29999092 |
tgcaaaagacatgaccacaatgaatgatttggtttggctgaagta |
29999048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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