View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15970_low_16 (Length: 264)

Name: NF15970_low_16
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15970_low_16
NF15970_low_16
[»] chr2 (1 HSPs)
chr2 (2-249)||(39644208-39644455)
[»] chr7 (2 HSPs)
chr7 (93-134)||(21890936-21890977)
chr7 (93-134)||(46007709-46007750)
[»] chr4 (1 HSPs)
chr4 (93-134)||(22616870-22616911)
[»] chr3 (1 HSPs)
chr3 (93-134)||(41049413-41049454)
[»] chr1 (1 HSPs)
chr1 (93-134)||(13621384-13621426)


Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 2 - 249
Target Start/End: Complemental strand, 39644455 - 39644208
Alignment:
Q  2 ttaaaaaattccaagtcaatgatctataatcaaatcactatcttaatatcttaaagtcaatgaaagcataatattaaatttgtgcagaaattttacctag 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  39644455 ttaaaaaattccaagtcaatgatctataatcaaatcactatcttaatatcttaaagtcaatgaaagcaaattattaaatttgtgcagaaattttacctag 39644356  T
Q  102 cagcagcatgagccgtgtcaaatccacctacaagcccaaatacaaatttcataaaactttccaaaaatagcaaagaagcatataataaatacttcaacat 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39644355 cagcagcatgagccgtgtcaaatccacctacaagcccaaatacaaatttcataaaactttccaaaaatagcaaagaagcatataataaatacttcaacat 39644256  T
Q  202 aaatgaaatgaaattaatcaaaatacaaattcattacctaaataaact 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39644255 aaatgaaatgaaattaatcaaaatacaaattcattacctaaataaact 39644208  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 21890936 - 21890977
Alignment:
Q  93 tttacctagcagcagcatgagccgtgtcaaatccacctacaa 134  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  21890936 tttacctagcagcagcatgagctgtgtcaaatccacctacaa 21890977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 46007750 - 46007709
Alignment:
Q  93 tttacctagcagcagcatgagccgtgtcaaatccacctacaa 134  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  46007750 tttacctagcagcagcatgaactgtgtcaaatccacctacaa 46007709  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 22616870 - 22616911
Alignment:
Q  93 tttacctagcagcagcatgagccgtgtcaaatccacctacaa 134  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  22616870 tttacctagcagcagcatgagctgtgtcaaatccacctacaa 22616911  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 41049454 - 41049413
Alignment:
Q  93 tttacctagcagcagcatgagccgtgtcaaatccacctacaa 134  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  41049454 tttacctagcagcagcatgagctgtgtcaaatccacctacaa 41049413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 13621426 - 13621384
Alignment:
Q  93 tttacctagcagcag-catgagccgtgtcaaatccacctacaa 134  Q
    ||||||||||||||| ||||||| |||||||||||||||||||    
T  13621426 tttacctagcagcaggcatgagctgtgtcaaatccacctacaa 13621384  T

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