View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15970_low_20 (Length: 238)
Name: NF15970_low_20
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_low_20 |
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| [»] chr8 (7 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 38320883 - 38321103
Alignment:
| Q |
18 |
gaaactagttagtgatgctgtgtcgaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaag |
117 |
Q |
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| T |
38320883 |
gaaactagttagtgatgctgtgtcgaaaattagacagagcatcttgttttttagggattcaaagagtcgaaggcaaaaatttaaggagtgcgttgaaaag |
38320982 |
T |
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| Q |
118 |
gttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtg |
217 |
Q |
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| T |
38320983 |
gttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtg |
38321082 |
T |
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| Q |
218 |
tgtttgaaagtcttcacttgt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
38321083 |
tgtttgaaagtcttcacttgt |
38321103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 38306058 - 38306277
Alignment:
| Q |
19 |
aaactagttagtgatgctgtgtcgaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaagg |
118 |
Q |
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||||||||||||| || ||||| ||||||||| |||||||||||||| | || |||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
38306058 |
aaactagttagtggtgacgtgtctaaaattagagagagcatcttgtttgtgagggattcaaagagtagaaggaaaaaatttaaggagtgcgttgaaaagg |
38306157 |
T |
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| Q |
119 |
ttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgt |
218 |
Q |
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| T |
38306158 |
ttggtggtattgacagttcagttcgcttgcatatggacatgtctatgactgtgaactcaacttatttgatgctcgatagtgctcttaaatatcaacatgt |
38306257 |
T |
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| Q |
219 |
gtttgaaagtcttcacttgt |
238 |
Q |
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| T |
38306258 |
gtttgaaagttttcacttgt |
38306277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 38325633 - 38325853
Alignment:
| Q |
18 |
gaaactagttagtgatgctgtgtcgaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaag |
117 |
Q |
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|||||||||||||||||| ||||| ||||||||| |||||||| ||||| | || ||||||||||| |||| | ||||||||||| ||| |||||||| |
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| T |
38325633 |
gaaactagttagtgatgccgtgtcaaaaattagagagagcatcatgtttgtgaggcattcaaagagtagaagggagaaatttaaggaatgcattgaaaag |
38325732 |
T |
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| Q |
118 |
gttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtg |
217 |
Q |
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| T |
38325733 |
gttggtggtgtcgatagttccgttcgcttgcatcaggactcgtctatgagtctgaactcaacttatttgatgcttgaaagtgctcttaaatatcggcgtg |
38325832 |
T |
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| Q |
218 |
tgtttgaaagtcttcacttgt |
238 |
Q |
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| T |
38325833 |
tgtttgaaagtcttcacttgt |
38325853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 97 - 238
Target Start/End: Original strand, 38313458 - 38313599
Alignment:
| Q |
97 |
tttaaggagtgcgttgaaaaggttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaa |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||| ||| |
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| T |
38313458 |
tttaaggagtgcgttgaaaaggttggtggtgttgatagttcggttcgcttgcatctagatatgtctatgagagtgaactcaacttatttgatgcttcaaa |
38313557 |
T |
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| Q |
197 |
gtgctcttaaatataggtgtgtgtttgaaagtcttcacttgt |
238 |
Q |
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| T |
38313558 |
gtgctcttaaatatcagcgtgcgtttgaaagtcttcacttgt |
38313599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 38308786 - 38309005
Alignment:
| Q |
19 |
aaactagttagtgatgctgtgtcgaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaagg |
118 |
Q |
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||||||||||||| ||| |||| || |||||| |||||||| ||||| | || |||||||||| || ||||||||||||||||| ||||||||| |
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| T |
38308786 |
aaactagttagtggtgccgtgtataagattagaaagagcatcatgtttgtgaggcgatcaaagagtcacagggaaaaatttaaggagtgcattgaaaagg |
38308885 |
T |
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| Q |
119 |
ttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtgt |
218 |
Q |
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| T |
38308886 |
ttggtggtgttgatagttctgttcgtttgcatctagacatgtctatgagagtgaactcaacttatttgatgcttcaaagtgctcttaaatatcagcttgc |
38308985 |
T |
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| Q |
219 |
gtttgaaagtcttcacttgt |
238 |
Q |
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| T |
38308986 |
atttgaaagtcttcacttgt |
38309005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 93 - 238
Target Start/End: Original strand, 38316863 - 38317008
Alignment:
| Q |
93 |
aaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgctt |
192 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||| ||| || ||||||||||||||||||||| | |||||||||||||| |||||||| |
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| T |
38316863 |
aaaatttaaggagtgcattgaaaaggttggtggtgttgatagttctgtttgcctgcatctggacatgtctatgagtctgaactcaacttatgtgatgctt |
38316962 |
T |
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| Q |
193 |
gaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgt |
238 |
Q |
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| T |
38316963 |
gaaagtgctcttaaatatcggcatgtatttgaaagttttcacttgt |
38317008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 18 - 238
Target Start/End: Original strand, 38300138 - 38300358
Alignment:
| Q |
18 |
gaaactagttagtgatgctgtgtcgaaaattagacagagcatcttgttttttagagattcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaag |
117 |
Q |
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|||||||||||| |||| ||| ||||||||| | |||||| ||||| | || ||||||||||| |||| |||||||||||||||| ||| |||| |
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| T |
38300138 |
gaaactagttagggatgtcctgtgtaaaattagagatagcatcatgtttgtgaggcattcaaagagtggaagggaaaaatttaaggagtgtattgcaaag |
38300237 |
T |
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| Q |
118 |
gttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaactcaacttatttgatgcttgaaagtgctcttaaatataggtgtg |
217 |
Q |
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||||||||||||||| |||| ||||||||||||||||||| | ||| | |||||||||||||||| |||||||||||||||||||||||| || ||| |
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| T |
38300238 |
gttggtggtgttgattgttccgttcgcttgcatctggacacgcctaaaagagtgaactcaacttattcaatgcttgaaagtgctcttaaatatcggcgtg |
38300337 |
T |
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| Q |
218 |
tgtttgaaagtcttcacttgt |
238 |
Q |
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||||||||||||||||||||| |
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| T |
38300338 |
tgtttgaaagtcttcacttgt |
38300358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 74 - 238
Target Start/End: Complemental strand, 38850501 - 38850337
Alignment:
| Q |
74 |
attcaaagagtcgaagccaaaaatttaaggagtgcgttgaaaaggttggtggtgttgatagttcagttcgcttgcatctggacatgtctatgactgtgaa |
173 |
Q |
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||||||||||| | || ||||||||||||||||| |||||||||||||||||||||||||||| |||| ||| ||| |||| || ||||||| | ||| |
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| T |
38850501 |
attcaaagagtaggagggaaaaatttaaggagtgctttgaaaaggttggtggtgttgatagttcggttcacttacatttggatatatctatgagtttgag |
38850402 |
T |
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| Q |
174 |
ctcaacttatttgatgcttgaaagtgctcttaaatataggtgtgtgtttgaaagtcttcacttgt |
238 |
Q |
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||||||||| || |||||||||| ||||||||||| |||||| |||||||||| ||||||||| |
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| T |
38850401 |
ttcaacttatatgttgcttgaaagagctcttaaataccggtgtgcgtttgaaagttttcacttgt |
38850337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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