View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15970_low_4 (Length: 518)
Name: NF15970_low_4
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 507; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 47280321 - 47280835
Alignment:
| Q |
1 |
tccagaactatccattcttttcagaaagagtctatacttctgcagccatttcataaactggaaacattcagcgaaaaaattacttaacttatataaatta |
100 |
Q |
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| T |
47280321 |
tccagaactatccattcttttcagaaagagtctatacttctgcagccatttcataaactggaaacattcagcgaaaaaattacttaacttatataaatta |
47280420 |
T |
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| Q |
101 |
aagtgtaaaggactggaaaaatgcctggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcc |
200 |
Q |
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| T |
47280421 |
aagtgtaaaggactggaaaaatgcctggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcc |
47280520 |
T |
|
| Q |
201 |
tctgccagtaaaacaacattaacattagacttaaactcgagttcagtaatggaatacttcatgacttgactaaaacataaaccagatattcaaaaataat |
300 |
Q |
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| T |
47280521 |
tctgccagtaaaacaacattaacattagacttaaactcgagttcagtaatggaatacttcatgacttgactaaaacataaaccagatattcaaaaataat |
47280620 |
T |
|
| Q |
301 |
ttaatagtttaaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactg |
400 |
Q |
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| T |
47280621 |
ttaatagtttaaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactg |
47280720 |
T |
|
| Q |
401 |
tcaactcctaactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgt |
500 |
Q |
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| T |
47280721 |
tcaactcctaactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaaactgggactccttattccgaattacatgctgccaaatgt |
47280820 |
T |
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| Q |
501 |
tcctttgcttctcca |
515 |
Q |
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| T |
47280821 |
tccttagctcctcca |
47280835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 29 - 265
Target Start/End: Original strand, 47274566 - 47274801
Alignment:
| Q |
29 |
agtctatacttctgcagccatttcataaactggaaacattcagcgaaa-aaattacttaacttatataaattaaagtgtaaaggactggaaaaatgcctg |
127 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||| |||| |||| | |||||| | ||||||||||| |||||||||| ||||| |||| | |
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| T |
47274566 |
agtctatacttctgcagccatttcatcaaccagaaacattcagtgaaagaaatgatttaactgagataaattaaagcgtaaaggactagaaaattgcccg |
47274665 |
T |
|
| Q |
128 |
gagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaacattaacatta |
227 |
Q |
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| T |
47274666 |
gagatggctcgccacgtcctcccttgtaatattttcaacattcatcaaaccaagaatcttttcaggtacagcctctgccagtaaaacaacattaacatga |
47274765 |
T |
|
| Q |
228 |
gacttaaactcgagttcagtaatggaatacttcatgac |
265 |
Q |
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|||| |||| |||||||||||| || |||||||||| |
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| T |
47274766 |
gact--cactcaagttcagtaatgaaacacttcatgac |
47274801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 14 - 219
Target Start/End: Original strand, 49060205 - 49060411
Alignment:
| Q |
14 |
attcttttcagaaagagtctatacttctgcagccatttcataaactggaaacattcagcgaaa-aaattacttaacttatataaattaaagtgtaaagga |
112 |
Q |
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| T |
49060205 |
attcttttcagataaagtctatacttctgcagccatttcataaaccagaaacattcagtgaaagaaagggtttaacttgcataaattaaagtgtaaagaa |
49060304 |
T |
|
| Q |
113 |
ctggaaaaatgcctggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaa |
212 |
Q |
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| T |
49060305 |
ctagaaaaatacctggagatggcttgccacgttctcccttgtaatattttcgacattcatcatatcaagaatttttttgggtacagcctctgcaagtaaa |
49060404 |
T |
|
| Q |
213 |
acaacat |
219 |
Q |
| |
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||||||| |
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| T |
49060405 |
acaacat |
49060411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 279 - 461
Target Start/End: Original strand, 49060519 - 49060699
Alignment:
| Q |
279 |
aaaccagatattcaaaaataatttaatagtttaaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgc |
378 |
Q |
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|||||||||||||||||| | ||| ||| | |||||| |||||||||||| |||||||||||||||||||||| ||||||||||| ||| ||||||| |
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| T |
49060519 |
aaaccagatattcaaaaacattttgataatgtaaaatttgaaataaaattcagtaaagctcgaggaaattgataagatataaaaattgttt--gtgttgc |
49060616 |
T |
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| Q |
379 |
agagagagtgaagaacatactgtcaactcctaactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaa |
461 |
Q |
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| T |
49060617 |
aggcagagtgaagaacatactgtcaatgcctaactgattaacagcagcaacaaacttgcggtgcagctccacagaccaaacaa |
49060699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 310 - 470
Target Start/End: Original strand, 47274917 - 47275075
Alignment:
| Q |
310 |
taaaatgagaaataaaattcggtaaagctcgaggaaattgataggatataaaaatagttctagtgttgcagagagagtgaagaacatactgtcaactcct |
409 |
Q |
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| T |
47274917 |
taaaatgagaaataaaaatcggtcaagctcgaggaaattgataggatataaaaattgttt--gtgttgcggacagagtggagaacatactgtcaatgcct |
47275014 |
T |
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| Q |
410 |
aactgattaacagtttcaagaaacttgcggtgcagctccacagaccaaacaaactgggact |
470 |
Q |
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| T |
47275015 |
aactgattaacagcagcaacaaatttgtggtgcagctccacagaccaaacagactgggact |
47275075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 124 - 205
Target Start/End: Complemental strand, 2894031 - 2893950
Alignment:
| Q |
124 |
cctggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgc |
205 |
Q |
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| T |
2894031 |
cctggagatggctggccaccttttcccttgtcagattttcaacattcatcagttcaagaatctttttgggtacagcctctgc |
2893950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 2889447 - 2889392
Alignment:
| Q |
147 |
tcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctc |
202 |
Q |
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| T |
2889447 |
tcccttgtcagattttcaacattcatcagttcaagaatctttttcggtacagcctc |
2889392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 124 - 218
Target Start/End: Original strand, 48869588 - 48869682
Alignment:
| Q |
124 |
cctggagatgggttgccacgtcttcccttgtaatattttcaacattcatcaaatcaaaaatctttttgggtacagcctctgccagtaaaacaaca |
218 |
Q |
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||||||||||| | ||||| | |||||||||| |||||||||||||||||| |||| ||||||||| |||| ||| ||||| || |||| |||| |
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| T |
48869588 |
cctggagatggctggccacattatcccttgtaagattttcaacattcatcaattcaagaatcttttttggtatagcatctgcaagcaaaataaca |
48869682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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