View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15970_low_5 (Length: 482)

Name: NF15970_low_5
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15970_low_5
NF15970_low_5
[»] chr7 (10 HSPs)
chr7 (1-466)||(5937007-5937472)
chr7 (12-112)||(25956464-25956563)
chr7 (1-44)||(1885581-1885624)
chr7 (1-44)||(2144547-2144590)
chr7 (3-53)||(2143853-2143902)
chr7 (1-44)||(37820088-37820131)
chr7 (7-50)||(44172892-44172935)
chr7 (1-44)||(48964070-48964113)
chr7 (3-44)||(22801749-22801790)
chr7 (7-44)||(37775996-37776033)
[»] chr2 (8 HSPs)
chr2 (1-114)||(43585943-43586056)
chr2 (1-44)||(13501086-13501129)
chr2 (2-44)||(14450803-14450845)
chr2 (3-44)||(24067263-24067304)
chr2 (1-44)||(24067758-24067801)
chr2 (6-44)||(8300227-8300265)
chr2 (7-39)||(13558774-13558806)
chr2 (1-53)||(37211884-37211936)
[»] chr8 (8 HSPs)
chr8 (1-44)||(26915248-26915291)
chr8 (5-72)||(42874534-42874601)
chr8 (3-44)||(31119097-31119138)
chr8 (1-36)||(6960692-6960727)
chr8 (1-44)||(10497824-10497867)
chr8 (1-44)||(24295145-24295188)
chr8 (1-44)||(27733855-27733898)
chr8 (1-44)||(34073986-34074029)
[»] chr4 (16 HSPs)
chr4 (1-44)||(44362674-44362717)
chr4 (1-53)||(13307885-13307937)
chr4 (6-44)||(37496717-37496755)
chr4 (1-53)||(13117437-13117489)
chr4 (13-44)||(11797636-11797667)
chr4 (13-44)||(47492399-47492430)
chr4 (2-44)||(10164862-10164904)
chr4 (7-44)||(683066-683103)
chr4 (7-44)||(9988707-9988744)
chr4 (1-53)||(13484031-13484084)
chr4 (7-44)||(20119959-20119996)
chr4 (1-34)||(28663500-28663533)
chr4 (4-37)||(43476811-43476844)
chr4 (7-39)||(8457939-8457971)
chr4 (4-44)||(22799901-22799941)
chr4 (9-37)||(40224513-40224541)
[»] chr6 (10 HSPs)
chr6 (1-53)||(6751881-6751933)
chr6 (1-44)||(10031578-10031621)
chr6 (1-44)||(19369825-19369868)
chr6 (1-44)||(5579662-5579705)
chr6 (1-35)||(29959183-29959217)
chr6 (2-44)||(31327824-31327866)
chr6 (1-39)||(31430288-31430326)
chr6 (1-106)||(1334669-1334774)
chr6 (7-44)||(10157998-10158035)
chr6 (13-74)||(26402658-26402719)
[»] chr5 (5 HSPs)
chr5 (1-42)||(30080511-30080552)
chr5 (1-44)||(21319953-21319996)
chr5 (2-44)||(16207599-16207641)
chr5 (1-39)||(42192284-42192322)
chr5 (1-37)||(26205775-26205811)
[»] scaffold0314 (1 HSPs)
scaffold0314 (1-44)||(8956-8999)
[»] chr1 (7 HSPs)
chr1 (3-44)||(18946042-18946083)
chr1 (1-44)||(24176827-24176871)
chr1 (3-42)||(24462280-24462319)
chr1 (4-53)||(7888106-7888155)
chr1 (7-44)||(8203835-8203872)
chr1 (7-39)||(14332422-14332454)
chr1 (7-35)||(41017421-41017449)
[»] scaffold0504 (1 HSPs)
scaffold0504 (1-44)||(8705-8748)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-44)||(18116-18159)
[»] chr3 (6 HSPs)
chr3 (1-40)||(14338495-14338534)
chr3 (1-44)||(49179723-49179766)
chr3 (7-45)||(17568690-17568728)
chr3 (7-52)||(19323448-19323493)
chr3 (11-67)||(1502592-1502648)
chr3 (7-39)||(42667634-42667666)


Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 5937472 - 5937007
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacaccagaatacgccttcaatatgaagtgta 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||     
T  5937472 taaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacaccagaatacgccttcaatatgaagtgtc 5937373  T
Q  101 cgtgcaatagaggttctccctcttcaatgattcaattttcaaacatgatagtaattaaacagtactgctctttttcaatttagctcttccctttgtctca 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5937372 cgtgcaatagagattctccctcttcaatgattcaattttcaaacatgatagtaattaaacagtactgctctttttcaatttagctcttccctttgtctca 5937273  T
Q  201 tttgaagccactaagaatcttgaatcaaagtacagcattttttcatcaggggtacttcactaattgtctactcactttcattctactgtatactattcat 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  5937272 tttgaagccactaagaatcttgaatcaaagtacagcattttttcatcaggggtacttcacaaattgtctactcactttcattctactgtatactattcat 5937173  T
Q  301 tcattattaggaccatctacaaaggagtggacttaaaaattaaggccactttgtatatagcataatattagagaagctccttatctcaccaataataaca 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||    
T  5937172 tcattattaggaccatctacaaaggagtggacttaaaaattaaggccactttgtatatagcataatattaaagaagctcattatctcaccaataataaca 5937073  T
Q  401 tcatagaatagtcacattaaacaaatggcagactttaacttaaatatacatacctcatgatattat 466  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5937072 tcatagaatagtcacattaaacaaatggcagactttaacttatatatacatacctcatgatattat 5937007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 25956464 - 25956563
Alignment:
Q  12 gaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacaccagaatacgccttcaatatgaagtgtacgtgcaataga 111  Q
    ||||||||||||||| |||||||||||||||||  ||||||| ||| ||||| |||||||| | | | |||||||||||  ||||||| |||||||||||    
T  25956464 gaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacatgtcggaca-cgggacacgccttcaatcagaagtgtccgtgcaataga 25956562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 1885581 - 1885624
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||| |||||||||||||| |||||||||||||||||    
T  1885581 taaaattttgaaaaaatgacataattcaatgtaatcacaagtgt 1885624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 2144590 - 2144547
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||||||||| |||||||||||| ||||    
T  2144590 taaaattttgagaaaatgacataattcaatgtaatcacacgtgt 2144547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 53
Target Start/End: Complemental strand, 2143902 - 2143853
Alignment:
Q  3 aaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 53  Q
    |||||||||||||||||||||||| |||||||||||| ||| |||||||||    
T  2143902 aaattttgagaaaatgacataattcaatgtaatcacatgtg-atgtgtcgg 2143853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 37820088 - 37820131
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||| ||||| |||||||||||||||||| |||||||    
T  37820088 taaaattttgaaaaaataacataatttaatgtaatcgcaagtgt 37820131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 44172935 - 44172892
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcacaagtgtatgtgt 50  Q
    |||||||||||||||||||| |||||||||||| |||| |||||    
T  44172935 tttgagaaaatgacataattcaatgtaatcacatgtgtttgtgt 44172892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 48964113 - 48964070
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||| |||||||||||||||||| ||| |||||||||||||    
T  48964113 taaaattgtgagaaaatgacataattcaatttaatcacaagtgt 48964070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 22801790 - 22801749
Alignment:
Q  3 aaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||| |||||||||||| | |||||||||||||||    
T  22801790 aaattttgagataatgacataattcactgtaatcacaagtgt 22801749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 37775996 - 37776033
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  37775996 tttgagaaaatgacataattaaatgtaatcacatgtgt 37776033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 43586056 - 43585943
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacaccagaatacgccttcaatatgaagtgta 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||  ||| |||||  | | || ||||||||  |||||||     
T  43586056 taaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacatggacacaccttcaatcagaagtgtt 43585957  T
Q  101 cgtgcaatagaggt 114  Q
    ||||||| ||||||    
T  43585956 cgtgcaacagaggt 43585943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 13501129 - 13501086
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||| |||||||||||||||| |||||||||||||||||    
T  13501129 taaaattttaagaaaatgacataattcaatgtaatcacaagtgt 13501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 14450845 - 14450803
Alignment:
Q  2 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  14450845 aaaattttgagaaaatcacataattcaatgtaatcacaagtgt 14450803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 24067263 - 24067304
Alignment:
Q  3 aaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||| ||||||||||||||| |||||||||||||||||    
T  24067263 aaattttgtgaaaatgacataattcaatgtaatcacaagtgt 24067304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24067758 - 24067801
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||    
T  24067758 taaaattttgagaaaatgtcataattaaatgaaatcacaagtgt 24067801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 8300265 - 8300227
Alignment:
Q  6 ttttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  8300265 ttttgagaaaatgacataatttagtgtaatcataagtgt 8300227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 13558806 - 13558774
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcaca 39  Q
    ||||||||||||||||||||||||| |||||||    
T  13558806 tttgagaaaatgacataatttaatgcaatcaca 13558774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 37211936 - 37211884
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 53  Q
    |||||||| |||||||||||| |||| |||||||| |||||||| | ||||||    
T  37211936 taaaatttcgagaaaatgacacaattcaatgtaattacaagtgtctatgtcgg 37211884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 26915291 - 26915248
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26915291 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 26915248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 42874534 - 42874601
Alignment:
Q  5 attttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggaca 72  Q
    |||||||||||||||||||||| |||||||||||||||||  |||| || ||||| ||| ||||||||    
T  42874534 attttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttggacacaacacatgtcggaca 42874601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 31119097 - 31119138
Alignment:
Q  3 aaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgt 31119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6960727 - 6960692
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  6960727 taaaattttgagaaaatgacataatttaatgtaatc 6960692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 10497867 - 10497824
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||    
T  10497867 taaaattttgagaaaataacataatttgatgtaatcacaagtgt 10497824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 24295188 - 24295145
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||    
T  24295188 taaaattgtgagaaaatgacacaatttaatgtaatcacaagtgt 24295145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27733855 - 27733898
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||||||| |||||| |||||||||||||||||    
T  27733855 taaaattttgagaaaatgatataattcaatgtaatcacaagtgt 27733898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34074029 - 34073986
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||    
T  34074029 taaaattttgaaaaaatgacataatttaatgtaatcataagtgt 34073986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44362674 - 44362717
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  44362674 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44362717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13307885 - 13307937
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 53  Q
    |||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  13307885 taaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcgg 13307937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 37496717 - 37496755
Alignment:
Q  6 ttttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  37496717 ttttgagaaaatgacataattcaatgtaatcacaagtgt 37496755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13117437 - 13117489
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 53  Q
    |||||||| |||||||||||| |||| |||||||||||||||||  |||||||    
T  13117437 taaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggtgtcgg 13117489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 44
Target Start/End: Complemental strand, 11797667 - 11797636
Alignment:
Q  13 aaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||||||||||||||||||||    
T  11797667 aaaatgacataatttaatgtaatcacaagtgt 11797636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 44
Target Start/End: Original strand, 47492399 - 47492430
Alignment:
Q  13 aaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||||||||||||||||||||    
T  47492399 aaaatgacataatttaatgtaatcacaagtgt 47492430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 10164904 - 10164862
Alignment:
Q  2 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||| |||| |||||||||||||| |||||||||||||||||    
T  10164904 aaaatcttgaaaaaatgacataattcaatgtaatcacaagtgt 10164862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 683066 - 683103
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  683066 tttgagaaaatgacataattgaatgtaatcacatgtgt 683103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 9988744 - 9988707
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  9988744 tttgagaaaatgacataattgaatgtaatcacatgtgt 9988707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13484031 - 13484084
Alignment:
Q  1 taaaattttgagaaaatgacataatt-taatgtaatcacaagtgtatgtgtcgg 53  Q
    ||||||||||||||||| ||||||||  |||||||||||||||||  |||||||    
T  13484031 taaaattttgagaaaataacataattcaaatgtaatcacaagtgtcagtgtcgg 13484084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 20119959 - 20119996
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||| ||||||||||||||||||| ||||    
T  20119959 tttgagaaaatgaaataatttaatgtaatcacatgtgt 20119996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 28663500 - 28663533
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaa 34  Q
    |||||||||||||||||||||||||| |||||||    
T  28663500 taaaattttgagaaaatgacataattcaatgtaa 28663533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 43476811 - 43476844
Alignment:
Q  4 aattttgagaaaatgacataatttaatgtaatca 37  Q
    |||||||||| |||||||||||||||||||||||    
T  43476811 aattttgagagaatgacataatttaatgtaatca 43476844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 8457939 - 8457971
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcaca 39  Q
    |||||||||||||||||||| ||||||||||||    
T  8457939 tttgagaaaatgacataattgaatgtaatcaca 8457971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 22799941 - 22799901
Alignment:
Q  4 aattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||| |||||||||||||||| |||||||||||| ||||    
T  22799941 aatttttagaaaatgacataattcaatgtaatcacacgtgt 22799901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 37
Target Start/End: Complemental strand, 40224541 - 40224513
Alignment:
Q  9 tgagaaaatgacataatttaatgtaatca 37  Q
    |||||||||||||||||||||||||||||    
T  40224541 tgagaaaatgacataatttaatgtaatca 40224513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 6751933 - 6751881
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 53  Q
    |||||||||||||||||||||||||| |||||||||||||||||  |||||||    
T  6751933 taaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgg 6751881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10031578 - 10031621
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  10031578 taaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 19369825 - 19369868
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  19369825 taaaattttgagaaaatgacataattcaatgtaatcacaagtgt 19369868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 5579662 - 5579705
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||||||||||| || |||||| ||||||||||    
T  5579662 taaaattttgagaaaatgacatagttcaatgtagtcacaagtgt 5579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 29959183 - 29959217
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaat 35  Q
    |||||||||||||||||||||||||| ||||||||    
T  29959183 taaaattttgagaaaatgacataattcaatgtaat 29959217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Original strand, 31327824 - 31327866
Alignment:
Q  2 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||| ||||||| ||||||||||||| ||||||||||||    
T  31327824 aaaattttaagaaaattacataatttaatgcaatcacaagtgt 31327866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 31430288 - 31430326
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcaca 39  Q
    |||||||||||||||||||||| ||| ||||||||||||    
T  31430288 taaaattttgagaaaatgacatgattaaatgtaatcaca 31430326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 1334669 - 1334774
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacaccagaatacgccttcaatatgaagtgta 100  Q
    ||||||||||| |||| ||||||||| ||||||||||||| |||  ||||||  ||| || |  |||| ||||||| | || ||||||||  |||||||     
T  1334669 taaaattttgaaaaaaggacataattcaatgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcagaagtgtc 1334768  T
Q  101 cgtgca 106  Q
    ||||||    
T  1334769 cgtgca 1334774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 10157998 - 10158035
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||| |||||||||||| ||||    
T  10157998 tttgagaaaatgacataattcaatgtaatcacatgtgt 10158035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 74
Target Start/End: Complemental strand, 26402719 - 26402658
Alignment:
Q  13 aaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtcggacacc 74  Q
    |||||||||||||| | |||||||||||||||  ||||||| ||| ||||| || |||||||    
T  26402719 aaaatgacataattcagtgtaatcacaagtgtcggtgtcggacacgatacatgttggacacc 26402658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 30080552 - 30080511
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagt 42  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  30080552 taaaattttgagaaaatgacataattcaatgtaatcacaagt 30080511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 21319996 - 21319953
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||| ||||||| |||||| |||||||||||||||||    
T  21319996 taaaattttgaaaaaatgatataattcaatgtaatcacaagtgt 21319953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 44
Target Start/End: Complemental strand, 16207641 - 16207599
Alignment:
Q  2 aaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||| |||||| |||||||||| |||||||||||||||||    
T  16207641 aaaatttagagaaattgacataattcaatgtaatcacaagtgt 16207599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 42192284 - 42192322
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcaca 39  Q
    ||||||||||||| |||||||||||| ||||||||||||    
T  42192284 taaaattttgagacaatgacataattcaatgtaatcaca 42192322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26205811 - 26205775
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatca 37  Q
    |||||||||||||||||||||||||| | ||||||||    
T  26205811 taaaattttgagaaaatgacataattcagtgtaatca 26205775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8956 - 8999
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  8956 taaaattttgagaaaatgacataattcaacgtaatcacaagtgt 8999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 18946083 - 18946042
Alignment:
Q  3 aaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  18946083 aaattttgagaaaatgacataattcaatgtaatcacgagtgt 18946042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24176827 - 24176871
Alignment:
Q  1 taaaattttgagaaaa-tgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||| |||||| |||||||||||||||||||||    
T  24176827 taaaattttgagaaaaatgacatgatttaatgtaatcacaagtgt 24176871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 3 - 42
Target Start/End: Complemental strand, 24462319 - 24462280
Alignment:
Q  3 aaattttgagaaaatgacataatttaatgtaatcacaagt 42  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  24462319 aaattttgaaaaaatgacataattcaatgtaatcacaagt 24462280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 7888106 - 7888155
Alignment:
Q  4 aattttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcgg 53  Q
    |||||||||||| |  |||||||||||||||||||||||||  |||||||    
T  7888106 aattttgagaaactcgcataatttaatgtaatcacaagtgtcggtgtcgg 7888155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Original strand, 8203835 - 8203872
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||| | |||||||||||||||||    
T  8203835 tttgagaaaatgacataagtgaatgtaatcacaagtgt 8203872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 14332422 - 14332454
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcaca 39  Q
    |||||||||||||||||||| ||||||||||||    
T  14332422 tttgagaaaatgacataattcaatgtaatcaca 14332454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 35
Target Start/End: Complemental strand, 41017449 - 41017421
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaat 35  Q
    |||||||||||||||||||||||||||||    
T  41017449 tttgagaaaatgacataatttaatgtaat 41017421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 8748 - 8705
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    |||||||||||||||||||||| ||| ||||||| |||||||||    
T  8748 taaaattttgagaaaatgacatgattcaatgtaaccacaagtgt 8705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 18159 - 18116
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||||| |||||||| ||||||||| |||||||    
T  18159 taaaattttgagaaaataacataattcaatgtaatcgcaagtgt 18116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 14338534 - 14338495
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaa 40  Q
    ||||||||||| |||||||||||||| |||||||||||||    
T  14338534 taaaattttgaaaaaatgacataattcaatgtaatcacaa 14338495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 49179766 - 49179723
Alignment:
Q  1 taaaattttgagaaaatgacataatttaatgtaatcacaagtgt 44  Q
    ||||||||||||||| ||||||||||  ||||||||||||||||    
T  49179766 taaaattttgagaaagtgacataattcgatgtaatcacaagtgt 49179723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Complemental strand, 17568728 - 17568690
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcacaagtgta 45  Q
    ||||||||||| ||||||||||||||||| |||||||||    
T  17568728 tttgagaaaattacataatttaatgtaattacaagtgta 17568690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 19323493 - 19323448
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcacaagtgtatgtgtcg 52  Q
    |||||||||||||||||||| ||| |||||||| ||||| ||||||    
T  19323493 tttgagaaaatgacataattgaatttaatcacatgtgtaagtgtcg 19323448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 1502592 - 1502648
Alignment:
Q  11 agaaaatgacataatttaatgtaatcacaagtgtatgtgtcggtcacaatacacgtc 67  Q
    |||||||||||||||| |||||||||||| |||| ||||| || ||||  |||||||    
T  1502592 agaaaatgacataattgaatgtaatcacatgtgtctgtgttggacacagaacacgtc 1502648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 7 - 39
Target Start/End: Original strand, 42667634 - 42667666
Alignment:
Q  7 tttgagaaaatgacataatttaatgtaatcaca 39  Q
    |||||||||||||||||||||||| ||||||||    
T  42667634 tttgagaaaatgacataatttaatataatcaca 42667666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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