View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15970_low_7 (Length: 451)
Name: NF15970_low_7
Description: NF15970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15970_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 35273645 - 35274069
Alignment:
| Q |
18 |
acaagttaagtgctgctgctaagataacggaaaaatccgttatggaggcagcagaattggcggataagaatatgacttttgaagttatttattatccgac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35273645 |
acaagttaagtgctgctgctaagataacggaaaaatccgttatggaggcagcagaattggcggataagaatatgacttttgaagttatttattatccgac |
35273744 |
T |
|
| Q |
118 |
ggctagtcattggtgtaattttgtggtggatgctgaagctgtaaagaaagcaatgcagattaattggcaatctggaatgagagttaaacattgcttgaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35273745 |
ggctagtcattggtgtaattttgtggtggatgctgaagccgtaaagaaagcaatgcagattaattggcaatctggaatgagagttaaacattgcttgaag |
35273844 |
T |
|
| Q |
218 |
actgatgaatcttcaaagagaagctcaatttttcaagggacagtatctgctctatctgatccttctcatcatccatggcgtatgcttcaggtatatatga |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35273845 |
actgatgaatcttcaaagagaagctcaatttttcaagggacagtatctgctctatctgatccttctcatcatccatggcgtatgcttcaggtatatatga |
35273944 |
T |
|
| Q |
318 |
tttcttcttttggtgtatattatttcaaatgcatataatgttatgtagtatatttttgttccataaatgttgttacagttgaagttgatagataactttc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35273945 |
tttcttcttttggtgtatattatttcaaatgcatataatgttatgtcgtatatttttgttccataaatgttgttacagttgaagttgatagataactttc |
35274044 |
T |
|
| Q |
418 |
cataattagataatgcgttgttcat |
442 |
Q |
| |
|
|||||||||||||||| | |||||| |
|
|
| T |
35274045 |
cataattagataatgcatggttcat |
35274069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 31 - 150
Target Start/End: Complemental strand, 17976462 - 17976343
Alignment:
| Q |
31 |
tgctgctaagataacggaaaaatccgttatggaggcagcagaattggcggataagaatatgacttttgaagttatttattatccgacggctagtcattgg |
130 |
Q |
| |
|
||||||||||||||| |||||||| ||| |||||||| ||||||||||||||||| || ||||||||||| | |||||||| ||||||| |||| |
|
|
| T |
17976462 |
tgctgctaagataacagaaaaatcgtttacggaggcagtggaattggcggataagaacttggcttttgaagttgtgtattatccaacggctaaaggttgg |
17976363 |
T |
|
| Q |
131 |
tgtaattttgtggtggatgc |
150 |
Q |
| |
|
||||||||||| || ||||| |
|
|
| T |
17976362 |
tgtaattttgttgttgatgc |
17976343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 8823655 - 8823727
Alignment:
| Q |
31 |
tgctgctaagataacggaaaaatccgttatggaggcagcagaattggcggataagaatatgacttttgaagtt |
103 |
Q |
| |
|
||||||||||||||| || |||| ||||||||||||| || |||||| ||||||| || ||||||||||| |
|
|
| T |
8823655 |
tgctgctaagataactaaagaatcggttatggaggcagtggagttggcgaataagaacatcgcttttgaagtt |
8823727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University