View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15971_high_4 (Length: 327)
Name: NF15971_high_4
Description: NF15971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15971_high_4 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 327
Target Start/End: Complemental strand, 12888903 - 12888590
Alignment:
| Q |
15 |
ggcaataagagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatctcgaggaggttaagtagtcttccatttttcaaaaatcacct |
114 |
Q |
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| T |
12888903 |
ggcaataagagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatctggaggaggttaagtagtctttcatttttcaaaaatcacct |
12888804 |
T |
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| Q |
115 |
caatttttcaggttctatattatcttacccgtgttaatttatttatttttaccgatcttattttatgttcattagttgatgtaaaaataaaggtgattat |
214 |
Q |
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| T |
12888803 |
caatttttcaggttctataatatcttacccgtgttaatttatttatttttaccgatcttattctatgttcattagttgaagtaaaaataaaggtgattat |
12888704 |
T |
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| Q |
215 |
ttatctctctcgttgtattcttaaatctgttaaaatatactgtcgtaa-nnnnnnnngctgaatcaaaagcaaaggacagcattaggaggaaacttgaca |
313 |
Q |
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| T |
12888703 |
ttatctctctcgttgtattcttaaatctgttaaaatatactgtcgtaatttttttttgctgaatcaaaagcaaaggacggcattaggagggaacttgaca |
12888604 |
T |
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| Q |
314 |
tcccaagagcaccc |
327 |
Q |
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| T |
12888603 |
tcccacgagcaccc |
12888590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 37579185 - 37579102
Alignment:
| Q |
15 |
ggcaataagagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatctcgaggaggttaagtagtcttccat |
98 |
Q |
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| T |
37579185 |
ggcaataagggtcataaaactggaccaaagtatcgaggatcccttgcaccaccttcgtctcgaggaggttaagcagtcttccat |
37579102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 15912443 - 15912360
Alignment:
| Q |
15 |
ggcaataagagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatctcgaggaggttaagtagtcttccat |
98 |
Q |
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| T |
15912443 |
ggcaataagagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatttcgaggagattaagtagtcttccat |
15912360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 185584 - 185667
Alignment:
| Q |
15 |
ggcaataagagtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatctcgaggaggttaagtagtcttccat |
98 |
Q |
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| T |
185584 |
ggcaataatggtcatagaattggaccaaagtatcgaggatcccttgtaccaccttcgtctcgaggaggttaagcagtcttccat |
185667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 27168620 - 27168547
Alignment:
| Q |
25 |
gtcataaaattggaccaaagtatcgaggatcccttgtaccaccttcatctcgaggaggttaagtagtcttccat |
98 |
Q |
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| T |
27168620 |
gtcatagaattggaccaaagtatcgaggatcccttgtaccaccttcgtctcgaggaggttaagcagtcttccat |
27168547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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