View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15971_high_5 (Length: 309)
Name: NF15971_high_5
Description: NF15971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15971_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 45274851 - 45274552
Alignment:
| Q |
1 |
tttcccgtcgtcttcttaattcttaggtgactgttgatgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
|
|
| T |
45274851 |
tttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctctgcttctgatcgcaagcttttggctaaaatgcaacg |
45274752 |
T |
|
| Q |
101 |
aaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaaaacaatccaggctgctcttgcctcttatcctaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45274751 |
aaaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaaaaccatccaggctgctcttgcctcttatcctaag |
45274652 |
T |
|
| Q |
201 |
ggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgttcccaaggatgctgttaacattcttatgtatgatgatg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45274651 |
ggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgtacccaaggatgctgttaacattcttatgtatggtgatg |
45274552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 2 - 300
Target Start/End: Complemental strand, 45283091 - 45282793
Alignment:
| Q |
2 |
ttcccgtcgtcttcttaattcttaggtgactgttgatgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacga |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45283091 |
ttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctcttcttctgatcgcaagcttttggctaaaatgcaacga |
45282992 |
T |
|
| Q |
102 |
aaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaaaacaatccaggctgctcttgcctcttatcctaagg |
201 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
45282991 |
aaaaattggagagcaaatattatgcctaatgctgttgttgccaaggatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagg |
45282892 |
T |
|
| Q |
202 |
gaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgttcccaaggatgctgttaacattcttatgtatgatgatg |
300 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45282891 |
gaaacaaaggcagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggatgctgttaacattcttatgtatggtgatg |
45282793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 2 - 300
Target Start/End: Complemental strand, 45271317 - 45271019
Alignment:
| Q |
2 |
ttcccgtcgtcttcttaattcttaggtgactgttgatgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacga |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271317 |
ttcccgtcgtcttcttaattctgaggtgactgttgacgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacga |
45271218 |
T |
|
| Q |
102 |
aaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaaaacaatccaggctgctcttgcctcttatcctaagg |
201 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
45271217 |
aaaggatggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaaaaccatccaggctgctcttgcctcttaccctaagg |
45271118 |
T |
|
| Q |
202 |
gaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgttcccaaggatgctgttaacattcttatgtatgatgatg |
300 |
Q |
| |
|
||||||||| ||| ||| |||||||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
45271117 |
gaaacaaagacagatatgttatctacgttaaggccggtgtctatgacgaatacatcactgtccccaaggaggctgttaacattcttatgtatggtgatg |
45271019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 300
Target Start/End: Complemental strand, 45294479 - 45294181
Alignment:
| Q |
2 |
ttcccgtcgtcttcttaattcttaggtgactgttgatgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacga |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || || |
|
|
| T |
45294479 |
ttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctgcttctgatcgcaagcttttggctaaaatgaaagga |
45294380 |
T |
|
| Q |
102 |
aaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaaaacaatccaggctgctcttgcctcttatcctaagg |
201 |
Q |
| |
|
|| |||||||||||| || || ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||| |||| ||||||| |
|
|
| T |
45294379 |
aacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgccgcttaccctaagg |
45294280 |
T |
|
| Q |
202 |
gaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgttcccaaggatgctgttaacattcttatgtatgatgatg |
300 |
Q |
| |
|
| ||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||| ||||||| || |||||||||||||||||||||| ||||| |
|
|
| T |
45294279 |
ggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatg |
45294181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 2 - 300
Target Start/End: Complemental strand, 45303439 - 45303141
Alignment:
| Q |
2 |
ttcccgtcgtcttcttaattcttaggtgactgttgatgatcaaggatacccttcatggatctcttcttctggtcgcaagcttttggctaaaatgcaacga |
101 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| || || |
|
|
| T |
45303439 |
ttcccgtcgtcttcttaattctgaggtgactgttgatgatcaaggatacccttcatggatctctgcttctgatcgcaagcttttggctaaaatgaaagga |
45303340 |
T |
|
| Q |
102 |
aaaaattggagagcaaatattaggcctaatgctgttgttgccaatgatggtagcggccaatttaaaacaatccaggctgctcttgcctcttatcctaagg |
201 |
Q |
| |
|
|| |||||||||||| || || ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||| |||| ||||||| |
|
|
| T |
45303339 |
aacggatggagagcaaatgttggggctaatgctgttgttgccaaggatggtagcggtcaatttaaaaccatccaggctgctattgccgcttaccctaagg |
45303240 |
T |
|
| Q |
202 |
gaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgttcccaaggatgctgttaacattcttatgtatgatgatg |
300 |
Q |
| |
|
| ||||||||||| ||| |||||||||||||||||| |||||||| |||||||||||| ||||||| || |||||||||||||||||||||| ||||| |
|
|
| T |
45303239 |
ggaacaaaggcagatatactatctacgttaaggctggcgtctatgatgaatacatcactattcccaaagacgctgttaacattcttatgtatggtgatg |
45303141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 188 - 268
Target Start/End: Complemental strand, 38588302 - 38588222
Alignment:
| Q |
188 |
ctcttatcctaagggaaacaaaggcaggtattttatctacgttaaggctggtgtctatgacgaatacatcactgttcccaa |
268 |
Q |
| |
|
|||||||||||||||| ||||||||| || ||||||| || |||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
38588302 |
ctcttatcctaagggattcaaaggcagatacattatctatgtcaaggctggggtctatgacgagtacatcaccattcccaa |
38588222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University