View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15971_high_9 (Length: 260)
Name: NF15971_high_9
Description: NF15971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15971_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 243
Target Start/End: Original strand, 22676374 - 22676599
Alignment:
| Q |
18 |
gaaggaatgtgatttggtttgtttgtcttaactatgaactccaatgattcagaggaactttccatcagtttcattttttcaaaacaaatattaaatcgtc |
117 |
Q |
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| T |
22676374 |
gaaggaatgtgatttggtttgtttgtcttaactatgaactccaatgattcagaggaactttccatcagtttcatgttttcaaaacaaatattaaatcgtc |
22676473 |
T |
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| Q |
118 |
tttcaatcatcttgcatcttttattaaaaacataaaaacattttccttttattttgcatacttaggaacaaaaatgtaacttggagatcacaaatccatg |
217 |
Q |
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| T |
22676474 |
tttcaatcatcttgcatcttttattaaaaacatgaaaacattttccttttattttgcatacttaggaagaaaaacataacttggagatcacaaatccatg |
22676573 |
T |
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| Q |
218 |
tgagattgatattttattacgatgat |
243 |
Q |
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| T |
22676574 |
ttggattgatattttattacgatgat |
22676599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 18609993 - 18609845
Alignment:
| Q |
93 |
ttttcaaaacaaatattaaatcgtctttcaatcatcttgcatcttttattaaaaa-cataaaaacattttccttttattttgcatacttaggaacaaaaa |
191 |
Q |
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|||| |||||||||||||||| |||| |||||| | |||||||||||||||||| ||| ||| |||| ||||| |||||| |||||||| | ||||| |
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| T |
18609993 |
tttttaaaacaaatattaaattctcttacaatcaccgtgcatcttttattaaaaataatataaaaatttccctttacttttgcgtacttagggagaaaaa |
18609894 |
T |
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| Q |
192 |
tg-taacttggagatcacaaatccatgtgagattgatattttattacga |
239 |
Q |
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| T |
18609893 |
agttaccttgatgatcataagtccctgtgggatcaatattttattacga |
18609845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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