View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15971_low_1 (Length: 467)
Name: NF15971_low_1
Description: NF15971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15971_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 17 - 457
Target Start/End: Complemental strand, 17595404 - 17594964
Alignment:
| Q |
17 |
agaattaacccaaaaatcaatgctccaacaactgaatgtgtaccaagaaattcagtaacagttgcacatgcaataacaccaactaatacataggttaatt |
116 |
Q |
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| T |
17595404 |
agaattaacccaaaaatcaatgctccaacaacagaatgtgtaccaagaaattcagtaacagttgcacatgcaataacaccaactaatacataggttaatt |
17595305 |
T |
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| Q |
117 |
ggtatgcatcccatttatcttcatctgnnnnnnnnactattattttgttgagtggagggcgtaacacaaagtaacaaaaaagagcaaacaatatggttaa |
216 |
Q |
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| T |
17595304 |
ggtatgcatcccatttatcttcatctgttttttttactattattttgttgagtggagggcgtaacacaaagtaacaaaaaagagcaaacaatatggttaa |
17595205 |
T |
|
| Q |
217 |
tatcactgatactattccaattataccattaataataaatggtataagacatataaacattgcccaattgataaagtcgttcattgtagctgctgttaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17595204 |
tatcactgatactattccaattataccattaataataaatggtataagacatataaacattgcccaattgataaagtcgttcattgtagctgctgttaat |
17595105 |
T |
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| Q |
317 |
gccactttaccaagtccagtataaagaatcttaagatctgaaagaatgtgggccaccactggaaaacttgtgatagtaacaattaatgaccataataaat |
416 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
17595104 |
gccacttttccaagtccagtataaagaatcttaagatctgaaagaatgtgggccaccactggaaaacttgtgatagtaacaactaatgaccataataaat |
17595005 |
T |
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| Q |
417 |
aaccattacggttcatatatgaattatcatcatatcctttg |
457 |
Q |
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| T |
17595004 |
aagcattacggttcatatatgaattctcatcatatcctttg |
17594964 |
T |
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