View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15971_low_11 (Length: 247)
Name: NF15971_low_11
Description: NF15971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15971_low_11 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45274799 - 45275025
Alignment:
| Q |
1 |
agggtgtccttgatcatcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274799 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
45274898 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaaccgcggtgaccttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45274899 |
aaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcaccatcatttg |
45274998 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaggctt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
45274999 |
catcgtcaaatccttccatacaggctt |
45275025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45283040 - 45283266
Alignment:
| Q |
1 |
agggtgtccttgatcatcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283040 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaagcaggtttgacatcaaacttcaagttgaattgctggaggatgtcggac |
45283139 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaaccgcggtgaccttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
45283140 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
45283239 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaggctt |
227 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
45283240 |
catcgtcaaatccttccatacaagctt |
45283266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 45271266 - 45271487
Alignment:
| Q |
1 |
agggtgtccttgatcatcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
45271266 |
agggtatccttgatcgtcaacagtcacctcagaattaagaagacgacgggaaggaggtttgatatcaaagttcaagttgaattgctggaggatgtcagac |
45271365 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaaccgcggtgaccttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
45271366 |
aaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctcaccatcatttg |
45271465 |
T |
|
| Q |
201 |
catcgtcaaatccttccataca |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
45271466 |
catcgtcaaatccttccataca |
45271487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45294428 - 45294654
Alignment:
| Q |
1 |
agggtgtccttgatcatcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294428 |
agggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
45294527 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaaccgcggtgaccttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||| |||||| |
|
|
| T |
45294528 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcaccgtcatttt |
45294627 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaggctt |
227 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
45294628 |
catcgtcaaatccttccatacaagctt |
45294654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 45303388 - 45303614
Alignment:
| Q |
1 |
agggtgtccttgatcatcaacagtcacctcagaattaagaagacgacgggaaagaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303388 |
agggtatccttgatcatcaacagtcacctcagaattaagaagacgacgggaagcaggtttgatatcaaacttcaagttgaattgctggaggatgtcggac |
45303487 |
T |
|
| Q |
101 |
aaaccagtcacaatgtcaagggcaaccgcggtgaccttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcaccatcatttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |||||||| ||||| ||||||||||| |||||| |
|
|
| T |
45303488 |
aaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcaccgtcatttt |
45303587 |
T |
|
| Q |
201 |
catcgtcaaatccttccatacaggctt |
227 |
Q |
| |
|
|||||||||||||||||||||| |||| |
|
|
| T |
45303588 |
catcgtcaaatccttccatacaagctt |
45303614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University