View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15971_low_14 (Length: 224)
Name: NF15971_low_14
Description: NF15971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15971_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 40779770 - 40779975
Alignment:
| Q |
1 |
tcagccatttcttcatcactgtggagggccaaaacacctgcattaatcaaaccaaatgataaagttttaacaaaatgcagctgatatttatatagaagtt |
100 |
Q |
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| T |
40779770 |
tcagccatttcttcatcactgtggagggccaaaacacctgcattaatcaaaccaaatgataaagttttaacaaaatgcagctgatatttatatagaagtt |
40779869 |
T |
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| Q |
101 |
tacaaagcatgttaaggttaaagtttacctctgaacgttttccttttcttgctttcattgcac-ttcaagtcaaaataaaatactcaaagtttactgtgc |
199 |
Q |
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| T |
40779870 |
tacaaagcatgttaaggttaaagtttacctctgaacgttttcctttccttgctttcattgcactttcaagtc-----aaaatactcaaagtttactgtgc |
40779964 |
T |
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| Q |
200 |
catactttcaa |
210 |
Q |
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||||||||||| |
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| T |
40779965 |
catactttcaa |
40779975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 40772621 - 40772673
Alignment:
| Q |
5 |
ccatttcttcatcactgtggagggccaaaacacctgcattaatcaaaccaaat |
57 |
Q |
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| T |
40772621 |
ccatttcttcatcactgtggagggccaaaacacctgcattaatcaaacaaaat |
40772673 |
T |
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