View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15971_low_2 (Length: 424)
Name: NF15971_low_2
Description: NF15971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15971_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 10 - 407
Target Start/End: Original strand, 22905421 - 22905829
Alignment:
| Q |
10 |
agatgaacacaagccgaaatgccattgaaaacaatacttcatttttatatcctctctgttgagaatagttatata--ggtctaacttccaaattaaagtt |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||| |
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| T |
22905421 |
agatgaacacaagccgaaatgccattgaaaacaatacttcatttttatatcctctctgttgagaatagttatatataggcctaacttccaaattgaagtt |
22905520 |
T |
|
| Q |
108 |
tttatattttctttgtgagagttaacttggaatagttatga--------gcttatttttatatcctctcttgttgagagtaatcatttgagaaaacatta |
199 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22905521 |
tttatattttctttgtgagagttaacatggaatagttatgaacttatgagcttatttttatatcctctcttgttgagagtaatcatttgagaaaacattg |
22905620 |
T |
|
| Q |
200 |
tattcaaacacaaacttgatcttgcattaaattt-gttttacaaatgtattttctcttattgcaccttgattatcatagctcacttgctcacaaaaccat |
298 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22905621 |
tattcaaacacaaacttgatcttgcattaaattttgttttacaaatgtattttctcttattgcaccttgattatcatagctcacttgctcacaaaaccat |
22905720 |
T |
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| Q |
299 |
aaattaagatcggaatcggatatgataatttattctatgatgtctctcctatcgttaccgtcaaatgagccatataagatttggtgtttattaagcaaac |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
22905721 |
aaattaagatcggaatcggatatgataatttattctatgatgtctctcctatcgttaccctcaaatgagccatataagatttggtgtttattaagcaaac |
22905820 |
T |
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| Q |
399 |
accactttt |
407 |
Q |
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||||||||| |
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| T |
22905821 |
accactttt |
22905829 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 195
Target Start/End: Original strand, 17182885 - 17182924
Alignment:
| Q |
156 |
tttatatcctctcttgttgagagtaatcatttgagaaaac |
195 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||| |
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| T |
17182885 |
tttatatcctttcttgttgagagttatcatttgagaaaac |
17182924 |
T |
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