View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15971_low_3 (Length: 391)
Name: NF15971_low_3
Description: NF15971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15971_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 33806043 - 33805669
Alignment:
| Q |
1 |
tgcatatttgttgtttgctgatctttgttgcttcttcttcctctttgttaccactaattgaaaatcatcggcattctttgaaaactctctctcaatatca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |
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| T |
33806043 |
tgcatatttgttgtttgctgatctttgttgcttcttcttcctctttgttaccactaattgaaaatcatcagcattctttggaaactctctc--aatatca |
33805946 |
T |
|
| Q |
101 |
gttagtagtcttgcttcagtatcatcatctttagccatattggcccaagattcctgcaaaaatagtttgttctccaagtcttgatcacactgtgttattg |
200 |
Q |
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| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33805945 |
gctagcagtcttgcttcagtatcatcatctttagccatattggcccaagattcctccaaaaatagtttgttctccaagtcttgatcacactgtgttattg |
33805846 |
T |
|
| Q |
201 |
ttgacttcttccacagagtcatcatcaatgttttcctccctaatctcaatatcttctacaaattcagaaccttcagaagaagattcatcagcatcttctg |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33805845 |
ttgacttcttccacagagtcatcatcaatgttttcctccctaatctcaatatcttctacaaattcagaaccttcagaagaagattcatcagcatcttctg |
33805746 |
T |
|
| Q |
301 |
ccttttcattattgaactccatgttcatctctttgctaaccttcttagtctcaactaccataatggccttccctttg |
377 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33805745 |
ccttttcattattaaactccatgttcatctctttgctaaccttcttagtctcaactaccataatggccttccctttg |
33805669 |
T |
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