View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15971_low_6 (Length: 288)
Name: NF15971_low_6
Description: NF15971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15971_low_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 281
Target Start/End: Original strand, 12888371 - 12888636
Alignment:
| Q |
20 |
tatcatggacacggaactgcaaatgttcttggcggaactctttaccctcttttattggggaagacttttttagagtatgctttgggctaccagttccctt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12888371 |
tatcatggacacggaactgcaaatgttcttggcggaactctttacccttttttattggggaagacttttttagagtatgctttgggctactggttccctt |
12888470 |
T |
|
| Q |
120 |
aggtctcttgctttggatttttgttccggctttcttttgagggttttggtttgatcctcctcttgtgcagttttcca----ttttttaataaaattttat |
215 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| |||| ||||| |
|
|
| T |
12888471 |
aggtctcttgctttggatttttgttctggctttcttttgagggttttggtttgatcctcctcttgtgcagcttttcattttttttttaaaaaaaatttat |
12888570 |
T |
|
| Q |
216 |
gagcgaggtgtagaggatggggtgctcttgggatgtcaagttccctcctaatgctgtcctttgctt |
281 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12888571 |
gagcgaggtgtagaggatggggtgctcgtgggatgtcaagttccctcctaatgccgtcctttgctt |
12888636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 25239148 - 25239088
Alignment:
| Q |
154 |
ttttgagggttttggtttgatcctcct-cttgtgcagttttccattttttaataaaatttt |
213 |
Q |
| |
|
||||||||||||||||||||| | | | ||||| |||||||| ||||||||||||||||| |
|
|
| T |
25239148 |
ttttgagggttttggtttgattcccttgcttgtaaagttttcccttttttaataaaatttt |
25239088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 25303301 - 25303241
Alignment:
| Q |
154 |
ttttgagggttttggtttgatcctcct-cttgtgcagttttccattttttaataaaatttt |
213 |
Q |
| |
|
||||||||||||||||||||| | | | ||||| |||||||| ||||||||||||||||| |
|
|
| T |
25303301 |
ttttgagggttttggtttgattcccttgcttgtaaagttttcccttttttaataaaatttt |
25303241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 22983831 - 22983903
Alignment:
| Q |
22 |
tcatggacacggaactgcaaatgttcttg-gcggaactctttaccctcttttattggggaagacttttttaga |
93 |
Q |
| |
|
|||||||||| || |||||||||||||| | ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
22983831 |
tcatggacacagatctgcaaatgttcttttgtggaactctttaccctcttttattacggaagacttttttaga |
22983903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 144
Target Start/End: Original strand, 22493857 - 22493982
Alignment:
| Q |
28 |
acacggaactgcaaatgt-tcttggcggaactctttaccctcttttattggggaagacttttttagagtatgctttgggc--------taccagttccct |
118 |
Q |
| |
|
|||||||||||||||||| | |||| |||||| |||||| ||||||||| ||||| || ||||||||| | ||||||| |||| |||||| |
|
|
| T |
22493857 |
acacggaactgcaaatgtcttttggtggaactatttaccttcttttattagggaatacgtttttagagatagttttgggcttctaaattaccgtttccct |
22493956 |
T |
|
| Q |
119 |
taggtctcttgctttggatttttgtt |
144 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
22493957 |
taggtctcttgctttgtatttttgtt |
22493982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 237
Target Start/End: Complemental strand, 28892971 - 28892891
Alignment:
| Q |
158 |
gagggttttggtttgatcctcc-tcttgtgcagttttccattttttaataaaattttatgagcgaggt-gtagaggatgggg |
237 |
Q |
| |
|
||||||||||||||| ||| || |||||| ||||||||| ||||||||||||||||| | ||| |||| ||||||||||||| |
|
|
| T |
28892971 |
gagggttttggtttggtcccccctcttgtacagttttcctttttttaataaaatttt-ttagcaaggtggtagaggatgggg |
28892891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 9936727 - 9936797
Alignment:
| Q |
155 |
tttgagggttttggtttgatcctcctcttgtgcagttttccattttttaataaaattttatgagcgaggtg |
225 |
Q |
| |
|
||||||||||||||||| |||||||||| | || |||| | ||||||| ||||||||| ||| ||||||| |
|
|
| T |
9936727 |
tttgagggttttggtttagtcctcctcttatacaatttttctttttttactaaaattttctgaacgaggtg |
9936797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University