View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15971_low_8 (Length: 261)
Name: NF15971_low_8
Description: NF15971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15971_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2309585 - 2309825
Alignment:
| Q |
1 |
gatggaaaattggttcaagatgaagaaagagaaacaggaagcatatcaaaagaagtttattggtcttatttgacaaccgttaaaggaggaattcttgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309585 |
gatggaaaattggttcaagatgaagaaagagaaacaggaagcatatcaaaagaagtttattggtcttatttgacaaccgttaaaggaggaattcttgttc |
2309684 |
T |
|
| Q |
101 |
caatcatactattggcacagtcttcattccaaatacttcagattggtagtaactattggatggcttgggtctgtcctacaaaatctgatgctaagcctat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309685 |
caatcatactattggcacagtcttcattccaaatacttcagattggtagtaactattggatggcttgggtctgtcctacaaaatctgatgctaagcctat |
2309784 |
T |
|
| Q |
201 |
atttgatatgaatttcatactacttatttatatggtacttt |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309785 |
atttgatatgaatttcatactacttatttatatggtacttt |
2309825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2302187 - 2302427
Alignment:
| Q |
1 |
gatggaaaattggttcaagatgaagaaagagaaacaggaagcatatcaaaagaagtttattggtcttatttgacaaccgttaaaggaggaattcttgttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||| |
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| T |
2302187 |
gatggaaaattggttcaagatgaagaaagagaaacaggaagcatatcaaaagaagtttactggtcttatttgacaactgttaaaggaggaattcttattc |
2302286 |
T |
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| Q |
101 |
caatcatactattggcacagtcttcattccaaatacttcagattggtagtaactattggatggcttgggtctgtcctacaaaatctgatgctaagcctat |
200 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2302287 |
caatcatactattggcacagtcttctttccaaatacttcagattgctagtaactattggatggcttgggtttgtcctacaaaatctgatgctaagcctat |
2302386 |
T |
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| Q |
201 |
atttgatatgaatttcatactacttatttatatggtacttt |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
2302387 |
atttgatatgaatttcatactacttatttatatggtacttt |
2302427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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