View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15972_low_1 (Length: 404)
Name: NF15972_low_1
Description: NF15972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15972_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 393
Target Start/End: Original strand, 41933627 - 41934003
Alignment:
| Q |
17 |
attatctccttccttatttgaaacgttgctttgtttattgttccttatatcctaaggattatgaatttcataaagacgatttgatcttgttatggatggc |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41933627 |
attatctccttccttatttgaaacgttgctttgtttattgttccttatatcctaaggattatgaatttcataaagacaatttgatcttgttatggatggc |
41933726 |
T |
|
| Q |
117 |
cgaaggtcttttacagcctaaaagaagtgggatgactttagaagaagttggtaatgaatattttaatgacttagcttcaaagtcattttttcaatgttct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
41933727 |
cgaaggtcttttacagcctaaaagaagtgggatgactttagaagaagttggtaatgaatattttaatgacttagcttcaaggtcattttttcaatgttct |
41933826 |
T |
|
| Q |
217 |
ggaaatgagaacaaaagttttgtgatgcatgatctagtgcacgatttagccacgttgctcggtggggaattctattacagaacagaagaacttggaaatg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41933827 |
ggaaatgagaacaaaagttttgtgatgcatgatctagtgcacgatttagccacgttgctcggtggggaattctattacagaacagaagaacttggaaatg |
41933926 |
T |
|
| Q |
317 |
aaacaaagattagtaccaagactcgtcatttatcatttagcacattcactgattcaatctcggaaaactttgatatt |
393 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
41933927 |
aaacaaagattagtaccaagactcgtcatttatcatttagcacattcactgatccaatctcggaaaactttgatatt |
41934003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 17 - 393
Target Start/End: Complemental strand, 4314302 - 4313926
Alignment:
| Q |
17 |
attatctccttccttatttgaaacgttgctttgtttattgttccttatatcctaaggattatgaatttcataaagacgatttgatcttgttatggatggc |
116 |
Q |
| |
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|||||||| ||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||| ||||||| |||||||||||||||||||||| |
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| T |
4314302 |
attatctctctccctatttgaaacgctgctttgtttattgttccttgtatcctaaagattacacatttcgtaaagacaatttgatcttgttatggatggc |
4314203 |
T |
|
| Q |
117 |
cgaaggtcttttacagcctaaaagaagtgggatgactttagaagaagttggtaatgaatattttaatgacttagcttcaaagtcattttttcaatgttct |
216 |
Q |
| |
|
||||| ||||||| || || | || ||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
4314202 |
cgaagatcttttaaagtctcctaaaaatgggaagactttagaagaagttggtaatgaatattttaatgacttagtttcaaggtcattttttcaatgttca |
4314103 |
T |
|
| Q |
217 |
ggaaatgagaacaaaagttttgtgatgcatgatctagtgcacgatttagccacgttgctcggtggggaattctattacagaacagaagaacttggaaatg |
316 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| ||||| ||||||||||||||| ||||||||| ||||||| |
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| T |
4314102 |
ggaagtgagaacaagagttttgttatgcatgacctggtgcatgatttggccacattgcttggtggagaattctattacagagtagaagaactcggaaatg |
4314003 |
T |
|
| Q |
317 |
aaacaaagattagtaccaagactcgtcatttatcatttagcacattcactgattcaatctcggaaaactttgatatt |
393 |
Q |
| |
|
||||||| ||| ||||||||||||| ||||||||||||| ||| |||| |||| |||||| || ||||| ||||||| |
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|
| T |
4314002 |
aaacaaatattggtaccaagactcgacatttatcatttaccacgttcattgatccaatcttgggaaactatgatatt |
4313926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 17 - 398
Target Start/End: Original strand, 4254184 - 4254565
Alignment:
| Q |
17 |
attatctccttccttatttgaaacgttgctttgtttattgttccttatatcctaaggattatgaatttcataaagacgatttgatcttgttatggatggc |
116 |
Q |
| |
|
||||||||| ||| | |||||||||||||||||||||||||||||| |||||||| ||||| |||||| ||| ||| |||||||||||||| ||||| || |
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|
| T |
4254184 |
attatctccctccctgtttgaaacgttgctttgtttattgttccttgtatcctaaagattacgaatttgatagagatgatttgatcttgttgtggatagc |
4254283 |
T |
|
| Q |
117 |
cgaaggtcttttacagcctaaaagaagtgggatgactttagaagaagttggtaatgaatattttaatgacttagcttcaaagtcattttttcaatgttct |
216 |
Q |
| |
|
|||| ||||||| ||| || || ||||| |||||||||||||||||| ||| |||||||||||||||||||| | |||||||||||| |||| |
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|
| T |
4254284 |
tgaagatcttttaagaccttcaaaaaatgggaatactttagaagaagttggttatgggtattttaatgacttagcttctagatcattttttcaacgttcc |
4254383 |
T |
|
| Q |
217 |
ggaaatgagaacaaaagttttgtgatgcatgatctagtgcacgatttagccacgttgctcggtggggaattctattacagaacagaagaacttggaaatg |
316 |
Q |
| |
|
|| ||||||||| | |||||||||||||||||||| ||||| |||||||| || || || | ||| |||||||||| ||||||| |||| ||||| || | |
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| T |
4254384 |
gggaatgagaaccagagttttgtgatgcatgatctggtgcatgatttagcaacatttcttgatggagaattctatttcagaacataagagcttgggaaag |
4254483 |
T |
|
| Q |
317 |
aaacaaagattagtaccaagactcgtcatttatcatttagcacattcactgattcaatctcggaaaactttgatattcttcg |
398 |
Q |
| |
|
|||| |||||| |||| || |||||||||||||||||||| |||| |||| |||||| ||||| |||||||||| |||| |
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| T |
4254484 |
aaactaagattggtactaacactcgtcatttatcatttagtgagttcagtgatccaatcttggaaagctttgatatttttcg |
4254565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 28 - 266
Target Start/End: Original strand, 4247076 - 4247314
Alignment:
| Q |
28 |
ccttatttgaaacgttgctttgtttattgttccttatatcctaaggattatgaatttcataaagacgatttgatcttgttatggatggccgaaggtcttt |
127 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| || | |||||||||| |||||||| | | ||| || |||||||||| |||||||| |||| ||||| |
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| T |
4247076 |
ccttatttgaaacgctgctttgtttactgttcattgtttcctaaggatcatgaattttacagagaggaactgatcttgttgtggatggcagaagatcttt |
4247175 |
T |
|
| Q |
128 |
tacagcctaaaagaagtgggatgactttagaagaagttggtaatgaatattttaatgacttagcttcaaagtcattttttcaatgttctggaaatgagaa |
227 |
Q |
| |
|
|||||||| || || ||| | ||||||||||| |||||||||||| |||||||||| |||| ||| | |||||||||||| |||| | | || || |
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|
| T |
4247176 |
tacagcctccaaaaactggtaagactttagaagcagttggtaatgatcattttaatgatttagtttccatatcattttttcaacgttcctggagtgggag |
4247275 |
T |
|
| Q |
228 |
caaaagttttgtgatgcatgatctagtgcacgatttagc |
266 |
Q |
| |
|
| ||||||||||||||||||| ||||| |||||||| |
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| T |
4247276 |
cctgtgttttgtgatgcatgatctggtgcatgatttagc |
4247314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 5e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 43 - 352
Target Start/End: Complemental strand, 34802352 - 34802043
Alignment:
| Q |
43 |
tgctttgtttattgttccttatatcctaaggattatgaatttcataaagacgatttgatcttgttatggatggccgaaggtcttttacagcctaaaagaa |
142 |
Q |
| |
|
||||||||||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||| || |
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|
| T |
34802352 |
tgctttgtttattattcactgtatcctaaggattatgaattcgataaagacgatttgatcttgttatggatggctgaagatcttttacagcctccggaaa |
34802253 |
T |
|
| Q |
143 |
gtgggatgactttagaagaagttggtaatgaatattttaatgacttagcttcaaagtcattttttcaatgttctggaaatgagaacaaaagttttgtgat |
242 |
Q |
| |
|
||||| |||||||||||||||| || ||| |||||||||||||||||||||| ||||||||||| ||||||| | || ||| | ||||||||||| |
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|
| T |
34802252 |
ttgggaagactttagaagaagttagttatgggtattttaatgacttagcttcaagatcattttttcatcgttctgggagtgggaatgagagttttgtgat |
34802153 |
T |
|
| Q |
243 |
gcatgatctagtgcacgatttagccacgttgctcggtggggaattctattacagaacagaagaacttggaaatgaaacaaagattagtaccaagactcgt |
342 |
Q |
| |
|
||||||||||||||| |||||||| |||||| | ||||| || ||||||| ||||| |||||||| || || |||||||||||| |||||||||||||| |
|
|
| T |
34802152 |
gcatgatctagtgcatgatttagcaacgttgataggtggagagttctattttagaacggaagaactagggaaagaaacaaagattggtaccaagactcgt |
34802053 |
T |
|
| Q |
343 |
catttatcat |
352 |
Q |
| |
|
|| ||||||| |
|
|
| T |
34802052 |
cacttatcat |
34802043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 6059723 - 6059613
Alignment:
| Q |
19 |
tatctccttccttatttgaaacgttgctttgtttattgttccttatatcctaaggattatgaatttcataaagacgatttgatcttgttatggatggccg |
118 |
Q |
| |
|
||||||| ||| |||||||||| || |||||||||||||| ||||||| || |||||||||||| | ||| | ||||| |||||||| |||||||||| |
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|
| T |
6059723 |
tatctccctccacatttgaaacgctgttttgtttattgttcgctatatcccaaagattatgaatttgagaaaaatgatttaatcttgttgtggatggccg |
6059624 |
T |
|
| Q |
119 |
aaggtctttta |
129 |
Q |
| |
|
||| ||||||| |
|
|
| T |
6059623 |
aagatctttta |
6059613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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