View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15972_low_2 (Length: 318)
Name: NF15972_low_2
Description: NF15972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15972_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 16 - 304
Target Start/End: Complemental strand, 33235683 - 33235415
Alignment:
| Q |
16 |
attctcaatatattatatattatgaattgataacaataaataatactcttctttnnnnnnnnnnnnncaagaaataatactcatatagctaataaacaca |
115 |
Q |
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| T |
33235683 |
attctcaatatattatatattatgaattgataacaataaataatacccttctttaaaaaaaaa----caagagataatactcatatagctaataaacaca |
33235588 |
T |
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| Q |
116 |
gttcataacatatttcaactcattacgctannnnnnnaatcgttgtgaagaaacaaaactacccaacgaaaatgacaagagcatcgacaattaatgggat |
215 |
Q |
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||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
33235587 |
gttcataacttatttcaactcattacgctatttttttaatcgtt----------------acccaacgaaaatgacaagagcatcgacaattaatgggat |
33235504 |
T |
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| Q |
216 |
ggaagaatttcattgaggaaaagtagtgatagataaaaaggaaagtcgaagaatcaaacaaaaataaggagtaagcacttaacaacatc |
304 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33235503 |
ggaagaatttcattgaggacaagtagtgatagataaaaaggaaagtcgaagaatcaaacaaaaataaggagtaagcacttaacaacatc |
33235415 |
T |
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