View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15973_high_1 (Length: 912)
Name: NF15973_high_1
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15973_high_1 |
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| [»] scaffold0290 (1 HSPs) |
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| [»] scaffold0046 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 634; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 634; E-Value: 0
Query Start/End: Original strand, 245 - 898
Target Start/End: Original strand, 23458037 - 23458690
Alignment:
| Q |
245 |
tttcaatgttcaagacttggaaattaatcttaaaaagttcgcagctaacaacttcagctgcatgcatctacagctaaatatctaacactagcaagcttca |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23458037 |
tttcaatgttcaagacttggaaattaatcttaaaaagttcgcagctaacaacttcagctgcatgcatctacagctaaatatctaacactagcaagcttca |
23458136 |
T |
|
| Q |
345 |
gttaacaacaatttggtgtcactatttgctaaccatacaaacaataattgaacaagagtttgaaaatataattagataaacatactaaataggagttcat |
444 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23458137 |
gttaacaacaatttggtgtcactatttgctaaccatacaaacaataattgaacaagagtttgaaaatataattagataaacatactaaataggagttcat |
23458236 |
T |
|
| Q |
445 |
agatacgatatataatcccaaatctaaaaacaaaacacaaatgatcccaaaatgaaacccatacaagttcacaaagagttcaaaaggcttcaactacaaa |
544 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23458237 |
agatacgatatataatcccaaatctaaaaacaaaacacaaaggatcccaaaatgaaacccatacaagttcacaaagagttcaaaaggcttcaactacaaa |
23458336 |
T |
|
| Q |
545 |
aatttaaggcgttaatcccttgcaatacctttcatcaaggtaaactttctatccaaaacatagatgaataattttctccgatccaattaaaatggtcatg |
644 |
Q |
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|||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23458337 |
aatttaaggcgttaatccattgcagtacctttcatcaaggtaaactttctatccaaaacatagatgaataattttctccgatccaattaaaatggtcatg |
23458436 |
T |
|
| Q |
645 |
gtttaatttcagatatagaaactgaaactttctttagggctttatcaaacccagctttgtggtgcattggaatttcatccctcaattcttcaattttagc |
744 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
23458437 |
gtttaatttcagatatagaaactgaaactttctttagggctttatcaaacccagctttgtggtgcattggaatttcatccctcgattcttcaattttagc |
23458536 |
T |
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| Q |
745 |
cttcaactcttcaatttcagccgtcaaatctttagtttcaagctccttcttttcgacaatgtattctttgatgtttagttttattttaatcttggtattt |
844 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23458537 |
cttcaactcttcaatttcagccgtcaaatctttagtttcaagctccttcttttcgacaatgtcttctttgatgtttagttttattttaatcttggtattt |
23458636 |
T |
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| Q |
845 |
tcctccatcaaaccttctactctttccactaactcactcttttgcaagaataat |
898 |
Q |
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| T |
23458637 |
tcctccatcaaaccttctactctttccactaactcactcttttgcaagaataat |
23458690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 23457652 - 23457878
Alignment:
| Q |
23 |
cggcgcacattcccttcttaattaattgacaattcttacatgtacttgacatcgccaaccaagcaatccgattatcacactggaggtgacttcagtttct |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23457652 |
cggcgcacattcccttcttaattaattgacaattcttacgtgtacttgacatcgccaaccaagcaatccgattatcacactggaggtgacttcagtttct |
23457751 |
T |
|
| Q |
123 |
ctcgattcacttgaggaaggacacattcatcataatttttccacgcctttcatcgattatccgagctttgctaccttgaatttgatgcttcaaacttctt |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23457752 |
ctcgattcacttgaggaaggacacattcatcataatttttccacgcctttcatcgattatccgagctttgctaccttgaatttgatgcttcaaacttctt |
23457851 |
T |
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| Q |
223 |
actcttcccgtagcgagtcttatttca |
249 |
Q |
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||||||||||||||||||||||||||| |
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| T |
23457852 |
actcttcccgtagcgagtcttatttca |
23457878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 645 - 760
Target Start/End: Original strand, 23462316 - 23462431
Alignment:
| Q |
645 |
gtttaatttcagatatagaaactgaaactttctttagggctttatcaaacccagctttgtggtgcattggaatttcatccctcaattcttcaattttagc |
744 |
Q |
| |
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|||||| ||||||||| |||||| ||| || ||| | || |||||||||||||| |||| |||| |||||||||| || ||| |||||||||| ||| |
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| T |
23462316 |
gtttaagttcagatattgaaactaaaatttgcttgactgccttatcaaacccagcattgtactgcactggaatttcagccttcacctcttcaatttcagc |
23462415 |
T |
|
| Q |
745 |
cttcaactcttcaatt |
760 |
Q |
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||||| ||||||||| |
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| T |
23462416 |
tttcaaatcttcaatt |
23462431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 2653 - 2570
Alignment:
| Q |
140 |
aggacacattcatcataatttttccacgcctttcatcgattatccgagctttgctaccttgaatttgatgcttcaaacttctta |
223 |
Q |
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||||||||| ||||||| | || |||||||||||||||| |||||||| |||||||||||||| || || |||||| ||||||| |
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| T |
2653 |
aggacacatccatcatattcttaccacgcctttcatcgactatccgagttttgctaccttgaacttaatacttcaaccttctta |
2570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 32145851 - 32145792
Alignment:
| Q |
170 |
tttcatcgattatccgagctttgctaccttgaatttgatgcttcaaacttcttactcttc |
229 |
Q |
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||||||||| |||||||| ||| || |||||||| ||||||||||||||||||||||||| |
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| T |
32145851 |
tttcatcgactatccgagtttttcttccttgaatatgatgcttcaaacttcttactcttc |
32145792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 759
Target Start/End: Original strand, 74565 - 74638
Alignment:
| Q |
686 |
ttatcaaacccagctttgtggtgcattggaatttcatccctcaattcttcaattttagccttcaactcttcaat |
759 |
Q |
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|||||||||||||| ||||| |||| |||||||||| | ||| |||||||||| ||| ||||| |||||||| |
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| T |
74565 |
ttatcaaacccagcattgtgctgcactggaatttcagtcttcacctcttcaatttcagctttcaaatcttcaat |
74638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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