View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15973_high_10 (Length: 249)
Name: NF15973_high_10
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15973_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 19278748 - 19278984
Alignment:
| Q |
1 |
gctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggcgatgaagagaaaagaatactcgaaagaaatgaagatgcggatgaat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
19278748 |
gctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggtgatgaagagaaaagaatactcgaaagaaatgaagacgcggatgaat |
19278847 |
T |
|
| Q |
101 |
ctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctcttggctgc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
19278848 |
ctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagatgtatattagagacactgctctcaatctcttggctgc |
19278947 |
T |
|
| Q |
201 |
aggtaatggaacaattagttcgggtctcaattggttc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
19278948 |
aggtaatggaacaattagttcgggtctcaattggttc |
19278984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 237
Target Start/End: Original strand, 12963495 - 12963727
Alignment:
| Q |
5 |
aagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggcgatgaagagaaaagaatactcgaaagaaatgaagatgcggatgaatctca |
104 |
Q |
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|||||||| |||| |||||||| |||| ||||||||||||||||||| || |||||||||| ||| | | |||| || ||||| | |||||||||||| |
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| T |
12963495 |
aagaaaatattcataaattcttgtacaattgtatatcttattacaaagacggtgaagagaaacgaacatttaaaagcaacgaagacgtggatgaatctca |
12963594 |
T |
|
| Q |
105 |
ttattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctcttggctgcaggt |
204 |
Q |
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| T |
12963595 |
ttcttgcctgctaaaagatctaatgaaggaaggattgggaaagggggaaatggctgagaaatatattataaacacaacactcaatctcttagctgcagga |
12963694 |
T |
|
| Q |
205 |
aatggaacaattagttcgggtctcaattggttc |
237 |
Q |
| |
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| T |
12963695 |
agtggaacagttagttcaggtctaagttggttc |
12963727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 80 - 237
Target Start/End: Original strand, 13244177 - 13244337
Alignment:
| Q |
80 |
gaaatgaagatgcggatgaatctcattattgcctggtaaaagaactaatgaaggaaagattgggaaagggcgaaacga---atgagacgtatattagaga |
176 |
Q |
| |
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|||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||| || |||||| |||||| ||||| |
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| T |
13244177 |
gaaatgaagatgtagatgaatctcgttattgcctgctaaaagaactaatgaaggaaagattgggaaagggggaaatgatcgatgagaagtatatcagaga |
13244276 |
T |
|
| Q |
177 |
cactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttc |
237 |
Q |
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|||||| | |||||||| | |||||| ||||||||||||||||| ||||| | ||||||| |
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| T |
13244277 |
cactgcggtaaatctcttcggtgcaggaaatggaacaattagttcaggtctaagttggttc |
13244337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 13080562 - 13080680
Alignment:
| Q |
118 |
aaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagacactgctctcaatctcttggctgcaggtaatggaacaatta |
217 |
Q |
| |
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||||| |||||| ||||| |||||| |||||| |||| | ||||| |||||||||||| ||| | |||||||||||| |||||| ||||||||||||| |
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| T |
13080562 |
aaagatctaatggaggaaggattggaaaagggggaaatggttgagaggtatattagagatactacaatcaatctcttggttgcaggaaatggaacaatta |
13080661 |
T |
|
| Q |
218 |
gttcgggtctcaattggtt |
236 |
Q |
| |
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|| | ||||||| |||||| |
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| T |
13080662 |
gtacaggtctcacttggtt |
13080680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 237
Target Start/End: Complemental strand, 13272082 - 13271962
Alignment:
| Q |
123 |
actaatgaaggaaagattgggaaagggcgaaacgaatgagac------gtatattagagacactgctctcaatctcttggctgcaggtaatggaacaatt |
216 |
Q |
| |
|
||||||||||||| | |||||||||| ||||||||||| | |||||||||||||||||| ||| ||||||||||||||| ||||||||| || |
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| T |
13272082 |
actaatgaaggaaggcttgggaaaggaagaaacgaatgaaaatgaaaagtatattagagacactgcattcactctcttggctgcaggaaatggaacagtt |
13271983 |
T |
|
| Q |
217 |
agttcgggtctcaattggttc |
237 |
Q |
| |
|
||||| ||||| | ||||||| |
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| T |
13271982 |
agttcaggtctaagttggttc |
13271962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 237
Target Start/End: Complemental strand, 13086555 - 13086483
Alignment:
| Q |
165 |
gtatattagagacactgctctcaatctcttggctgcaggtaatggaacaattagttcgggtctcaattggttc |
237 |
Q |
| |
|
|||||||||||||||||| |||||||||| |||||||| | ||||||| ||||||| ||||| | ||||||| |
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| T |
13086555 |
gtatattagagacactgcattcaatctcttagctgcaggaagtggaacagttagttcaggtctaagttggttc |
13086483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 13214314 - 13214251
Alignment:
| Q |
115 |
gtaaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagaca |
178 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||||| |||| | |||||| |||| ||||||||| |
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|
| T |
13214314 |
gtaaaagcactaatgaaggaaggatttggaaagggggaaatggatgagaagtatcttagagaca |
13214251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 13086724 - 13086656
Alignment:
| Q |
5 |
aagaaaatcttcacgaattcttgaacaaatgtatatcttatta---caaaggcgatgaagagaaaagaa |
70 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||| ||||||| |||||| |||||||||| ||||| |
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| T |
13086724 |
aagaaaatcttcaccaattcttgtccaaatgtataacttattattccaaaggtgatgaagagagaagaa |
13086656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 178
Target Start/End: Complemental strand, 19727647 - 19727585
Alignment:
| Q |
116 |
taaaagaactaatgaaggaaagattgggaaagggcgaaacgaatgagacgtatattagagaca |
178 |
Q |
| |
|
|||||| ||||||||||||| ||| |||||||| |||| |||||||| |||| ||||||||| |
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| T |
19727647 |
taaaagcactaatgaaggaaggatctggaaagggggaaatgaatgagaagtatcttagagaca |
19727585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 13244125 - 13244186
Alignment:
| Q |
1 |
gctaaagaaaatcttcacgaattcttgaacaaatgtatatcttattacaaaggcgatgaaga |
62 |
Q |
| |
|
|||| ||||||||||||| |||||||| | ||||||||| || |||||||||| ||||||| |
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|
| T |
13244125 |
gctagagaaaatcttcaccaattcttggagaaatgtataactgattacaaaggaaatgaaga |
13244186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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