View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15973_high_14 (Length: 221)
Name: NF15973_high_14
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15973_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 7432427 - 7432237
Alignment:
| Q |
17 |
gtgctcaatacgtgaaagtagtggtaatttggttaacaaaacaaaagtgaaggttcatacactgggtaccaattattggaaaatcatccctgagtttcct |
116 |
Q |
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| T |
7432427 |
gtgctcaatacgtgaaagtagtggtaatttggttaacaaaacaaaagtgaaggttcatacactgggtaccaattattggaaaatcatccctgagtttcct |
7432328 |
T |
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| Q |
117 |
tttggtggtgtccctattgagagaatgggaaattttgttagtggcacaattaattggttgacctctattcaattttatagggaaagtccat |
207 |
Q |
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| T |
7432327 |
tttggcggtgtccctattgagagaacgggaaaatttgtaagtggcacaattaattggttgacctctattgaattttatagggaaagtccat |
7432237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 63 - 183
Target Start/End: Original strand, 13479305 - 13479425
Alignment:
| Q |
63 |
gtgaaggttcatacactgggtaccaattattggaaaatcatccctgagtttccttttggtggtgtccctattgagagaatgggaaattttgttagtggca |
162 |
Q |
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| T |
13479305 |
gtgaaggttcatacattgggtacccatttttggaaaaccattcaggagtttccctttggtgttatgcctgttgagaaatctggaaaatttgtgagtggca |
13479404 |
T |
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| Q |
163 |
caattaattggttgacctcta |
183 |
Q |
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| T |
13479405 |
ggattaattggttggcctcta |
13479425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 2686671 - 2686524
Alignment:
| Q |
34 |
gtagtggtaatttggttaacaaaacaaaagtgaaggttcatacactgggtaccaattattggaaaatcatccctgagtttccttttggtggtgtccctat |
133 |
Q |
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| T |
2686671 |
gtagtgataattgggttcacaaatctgaagtaaaggttcatactttgggttctaatatttggaaaaacatccatgagtttccttttggtgttttccctgt |
2686572 |
T |
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| Q |
134 |
tgagagaatgggaaattttgttagtggcacaattaattggttgacctc |
181 |
Q |
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| T |
2686571 |
tgcaagatcaggtaaatttgtcagtggcactattaattggttggcctc |
2686524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 2678684 - 2678616
Alignment:
| Q |
108 |
gagtttccttttggtggtgtccctattgagagaatgggaaattttgttagtggcacaattaattggttg |
176 |
Q |
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| T |
2678684 |
gagtttccttttggtgttttcccttttggaagatcgggaaaatttgttagtggcactattaattggttg |
2678616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 52 - 185
Target Start/End: Complemental strand, 1078519 - 1078386
Alignment:
| Q |
52 |
acaaaacaaaagtgaaggttcatacactgggtaccaattattggaaaatcatccctgagtttccttttggtggtgtccctattgagagaat-gggaaatt |
150 |
Q |
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| T |
1078519 |
acaaaactgaagtgaagattcatacattgggtaccaattcttggaaaagcattcaagagtttccttttggtgttgtcccaattg-gacaatctggaaaat |
1078421 |
T |
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| Q |
151 |
ttgttagtggcacaattaattggttgacctctatt |
185 |
Q |
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| T |
1078420 |
ttctgagtggcacgattaattggttgacctctatt |
1078386 |
T |
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