View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15973_high_16 (Length: 209)

Name: NF15973_high_16
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15973_high_16
NF15973_high_16
[»] chr3 (3 HSPs)
chr3 (17-191)||(29554228-29554402)
chr3 (134-191)||(29539383-29539440)
chr3 (17-107)||(29539494-29539593)
[»] chr5 (2 HSPs)
chr5 (17-131)||(42780238-42780361)
chr5 (134-191)||(42780402-42780459)
[»] chr2 (2 HSPs)
chr2 (134-191)||(42194675-42194732)
chr2 (17-131)||(42194771-42194891)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 5e-92; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 29554402 - 29554228
Alignment:
Q  17 cagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagttaacacggtagctcgattcgtcccctttcctcttccgcttcttcc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29554402 cagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagttaacacggtagctcgattcgtcccctttcctcttccgcttcttcc 29554303  T
Q  117 cttactgctccctgcttcattactatccacatcacataaaccattctctaatgccctaaccaaattctcgaagaa 191  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29554302 cttactgctccctgcttcattactatccacatcacataaaccattctctaatgccctaaccaaattctcaaagaa 29554228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 29539440 - 29539383
Alignment:
Q  134 cattactatccacatcacataaaccattctctaatgccctaaccaaattctcgaagaa 191  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29539440 cattactatccacatcacttaaaccattctctaatgccctaaccaaattctcgaagaa 29539383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 29539593 - 29539494
Alignment:
Q  17 cagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagtta---------acacggtagctcgattcgtcccctttcctcttcc 107  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||   ||||         |||||||||||||||| |||||||||||||||||    
T  29539593 cagatccgacgtttgcataggtacattcaacacaataccactcattatcaacggttattttgctggacacggtagctcgatttgtcccctttcctcttcc 29539494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 17 - 131
Target Start/End: Original strand, 42780238 - 42780361
Alignment:
Q  17 cagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagtta---------acacggtagctcgattcgtcccctttcctcttcc 107  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||         |||| ||||||||||| |||||||||||||||||    
T  42780238 cagatccgacgtttgcataggtacattgctcacaagaccactcattatcattagttattatgctggacactgtagctcgatttgtcccctttcctcttcc 42780337  T
Q  108 gcttcttcccttactgctccctgc 131  Q
     |||||||||||||||||||||||    
T  42780338 acttcttcccttactgctccctgc 42780361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 42780402 - 42780459
Alignment:
Q  134 cattactatccacatcacataaaccattctctaatgccctaaccaaattctcgaagaa 191  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  42780402 cattactatccacatcacataaaccattctctaatgcactaaccaaattcttgaagaa 42780459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 3e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 134 - 191
Target Start/End: Complemental strand, 42194732 - 42194675
Alignment:
Q  134 cattactatccacatcacataaaccattctctaatgccctaaccaaattctcgaagaa 191  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42194732 cattactatccacatcacataaaccattctctaatgccctgaccaaattctcgaagaa 42194675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 42194891 - 42194771
Alignment:
Q  17 cagatccgacgtttgcataggtacatcgctcacaataccactcattatcataagtta---------acacggtagctcgattcgtcccctttcctcttcc 107  Q
    ||||||| || ||||||||||||||| |||||||| ||||||||||||||| |||||         |||||||||||   ||||||||||||||||||||    
T  42194891 cagatccaacatttgcataggtacattgctcacaagaccactcattatcatcagttaatctgctggacacggtagct---ttcgtcccctttcctcttcc 42194795  T
Q  108 gcttcttcccttactgctccctgc 131  Q
    |||| |||| ||||||||||||||    
T  42194794 gctttttcctttactgctccctgc 42194771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University