View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15973_high_17 (Length: 207)

Name: NF15973_high_17
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15973_high_17
NF15973_high_17
[»] chr1 (6 HSPs)
chr1 (1-207)||(19278533-19278739)
chr1 (1-204)||(13243913-13244116)
chr1 (2-167)||(12963316-12963481)
chr1 (2-167)||(13080291-13080456)
chr1 (2-207)||(13272217-13272422)
chr1 (2-75)||(13086738-13086811)


Alignment Details
Target: chr1 (Bit Score: 174; Significance: 8e-94; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 19278739 - 19278533
Alignment:
Q  1 ccttcttctcttgaccaatgtgtagccacttttgcagcttccaaatacattttggcatatagtgtctatacaatagcaaatcctcaaggccactaacagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19278739 ccttcttctcttgaccaatgtgtagccacttttgcagcttccaaatacattttggcatatagtgtctatacaatagcaaatcctcaaggacactaacagc 19278640  T
Q  101 ttttacataagcaatatccgataactcgctgtacttgtaaggaagggaattaggatcgaatccaaatnnnnnnntgcaagtaatatcaaaggtaaacttc 200  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||| ||    
T  19278639 ttttacataagcaatatccgataactcgttgtacttgtaaggaagggaattaggatcgaatccaaataaaaaaatgcaagtaatatcaaaggtaaacctc 19278540  T
Q  201 tcaataa 207  Q
    |||||||    
T  19278539 tcaataa 19278533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 13244116 - 13243913
Alignment:
Q  1 ccttcttctcttgaccaatgtgtagccacttttgcagcttccaaatacattttggcatatagtgtctatacaatagcaaatcctcaaggccactaacagc 100  Q
    ||||||||||| ||||||| |||||||||||||| ||||||||||||||||| || ||||||||||||  ||||| || |||||||||  |||||| |||    
T  13244116 ccttcttctctagaccaatttgtagccacttttgtagcttccaaatacatttcggaatatagtgtctacgcaataccatatcctcaagtacactaaaagc 13244017  T
Q  101 ttttacataagcaatatccgataactcgctgtacttgtaaggaagggaattaggatcgaatccaaatnnnnnnntgcaagtaatatcaaaggtaaacttc 200  Q
    |||| ||||||||||||| ||||||||  || |||||||||||||| |||||||||||||||||||        |||||| |||||||||||||||| ||    
T  13244016 tttttcataagcaatatctgataactcattgcacttgtaaggaaggcaattaggatcgaatccaaaaaaaaaagtgcaagaaatatcaaaggtaaacctc 13243917  T
Q  201 tcaa 204  Q
    ||||    
T  13243916 tcaa 13243913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 12963481 - 12963316
Alignment:
Q  2 cttcttctcttgaccaatgtgtagccacttttgcagcttccaaatacattttggcatatagtgtctatacaatagcaaatcctcaaggccactaacagct 101  Q
    |||||||||||||||||| |||||||| ||||| |||||||||| ||||||||| |||||||| ||| |||||| |  ||||||||   ||  || ||||    
T  12963481 cttcttctcttgaccaatttgtagccatttttgtagcttccaaaaacattttggaatatagtgcctaaacaatatcgtatcctcaatcacagaaatagct 12963382  T
Q  102 tttacataagcaatatccgataactcgctgtacttgtaaggaagggaattaggatcgaatccaaat 167  Q
    |||||||| |||||||| || |||||  || |||||||||||||| |||||||||| ||| |||||    
T  12963381 tttacatacgcaatatctgaaaactcattgaacttgtaaggaaggcaattaggatcaaattcaaat 12963316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 167
Target Start/End: Complemental strand, 13080456 - 13080291
Alignment:
Q  2 cttcttctcttgaccaatgtgtagccacttttgcagcttccaaatacattttggcatatagtgtctatacaatagcaaatcctcaaggccactaacagct 101  Q
    |||||||||||||||||| |||| ||| ||||| |||||||||||||||||||| |||||||| ||  |||| | || |||||||    ||   | ||||    
T  13080456 cttcttctcttgaccaatctgtaaccatttttgtagcttccaaatacattttggaatatagtgcctcgacaagatcacatcctcagtcacagatatagct 13080357  T
Q  102 tttacataagcaatatccgataactcgctgtacttgtaaggaagggaattaggatcgaatccaaat 167  Q
    |||||||||| |||||| |||| ||| ||| | |||| ||||||| |||||||||| |||||||||    
T  13080356 tttacataagaaatatctgatatctcactgaaattgttaggaaggcaattaggatcaaatccaaat 13080291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 207
Target Start/End: Original strand, 13272217 - 13272422
Alignment:
Q  2 cttcttctcttgaccaatgtgtagccacttttgcagcttccaaatacattttggcatatagtgtctatacaatagcaaatcctcaaggccactaacagct 101  Q
    |||||||||||||||||| |||||||| || || |||||||||| ||||||||| | | |||| |||| |||||    ||||||||   ||  || ||||    
T  13272217 cttcttctcttgaccaatatgtagccatttctgtagcttccaaacacattttggaacagagtgcctatgcaataatgtatcctcaatcacagaaatagct 13272316  T
Q  102 tttacataagcaatatc-cgataactcgctgtacttgtaaggaagggaattaggatcgaatccaaatnnnnnnntgcaagtaatatcaaaggtaaacttc 200  Q
    |||||||||||||| || ||| | |||  || |||||||||||||  |||||||||| |||||||||       | ||||||||||||||||| ||| ||    
T  13272317 tttacataagcaatttctcga-agctcattgaacttgtaaggaagacaattaggatcaaatccaaataaaaaattacaagtaatatcaaaggtgaacctc 13272415  T
Q  201 tcaataa 207  Q
    |||||||    
T  13272416 tcaataa 13272422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 13086738 - 13086811
Alignment:
Q  2 cttcttctcttgaccaatgtgtagccacttttgcagcttccaaatacattttggcatatagtgtctatacaata 75  Q
    |||||||||||||||||| |||||||| ||||| | ||||||||   ||||||| |||||||| ||| ||||||    
T  13086738 cttcttctcttgaccaatttgtagccatttttgtaacttccaaaagtattttggaatatagtgcctagacaata 13086811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University