View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15973_high_8 (Length: 348)
Name: NF15973_high_8
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15973_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 25352733 - 25353052
Alignment:
| Q |
17 |
cacttagacctggaactcttgaaatttaacaccattccacaagtatgcatcgggcatagtgacgtcaccctaaatgtttccttgcctctcactattctca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25352733 |
cacttagacctggaactcttgaaatttaacaccattccacaagtatgcatcgggcatagtgacgtcaccctaaatgtttccttgcttctcactattctca |
25352832 |
T |
|
| Q |
117 |
cattaactttgtatccacattttttgttgaacttgcaaacagctttaaccctccttttctcaatcttggcaaattttatttttctgccatttaatacatt |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25352833 |
cattaactttgtatccacatttttggttgaacttacaaacagctttaaccctccttttctcaatcttggcaaattttatttttctgccatttaatacatc |
25352932 |
T |
|
| Q |
217 |
gagttctcgaacaacgtccttaaactggtgtcgagaagtaaactccattccaatactgaatttgaagtctttggtgatttcagcttctgcattgaactta |
316 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25352933 |
gtgctctcgaacaacgtccttaaactggtgtcgagaagtaaactccattccaatactgaatttgaagtctttggtgatttcagctcctgcattgaactta |
25353032 |
T |
|
| Q |
317 |
tcatattttggcttaccctt |
336 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25353033 |
tcatattttggcttaccctt |
25353052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 17 - 336
Target Start/End: Original strand, 25357407 - 25357726
Alignment:
| Q |
17 |
cacttagacctggaactcttgaaatttaacaccattccacaagtatgcatcgggcatagtgacgtcaccctaaatgtttccttgcctctcactattctca |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||| |||||| |||||| | | | || || | || |
|
|
| T |
25357407 |
cacttagacctggaactattgaaatttaacaccattccacaagtatgcatcggacgtagtgacctcacccaaaatgtattagtctttttcgctgtacttg |
25357506 |
T |
|
| Q |
117 |
cattaactttgtatccacattttttgttgaacttgcaaacagctttaaccctccttttctcaatcttggcaaattttatttttctgccatttaatacatt |
216 |
Q |
| |
|
|| ||| |||||| ||||||||| ||||||| ||||||||| |||| ||||||| || || ||| |||||||||||||||||||||||||||||| |
|
|
| T |
25357507 |
caaaaacattgtatgcacatttttggttgaaccaacaaacagctctaacattccttttgccattcctggtaaattttatttttctgccatttaatacatt |
25357606 |
T |
|
| Q |
217 |
gagttctcgaacaacgtccttaaactggtgtcgagaagtaaactccattccaatactgaatttgaagtctttggtgatttcagcttctgcattgaactta |
316 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
25357607 |
gagctctcgaacaacgtccttaaattggtgtcgagaagtaaactccattccgatactgaatttgaagtctttggtgatttcagcttctgtatagaactta |
25357706 |
T |
|
| Q |
317 |
tcatattttggcttaccctt |
336 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
25357707 |
tcatattttggcttaccctt |
25357726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 126 - 327
Target Start/End: Original strand, 25362194 - 25362395
Alignment:
| Q |
126 |
tgtatccacattttttgttgaacttgcaaacagctttaaccctccttttctcaatcttggcaaattttatttttctgccatttaatacattgagttctcg |
225 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| ||||| ||| ||| || ||| || ||||||||| | |||| |||||| |||||| | ||| | |
|
|
| T |
25362194 |
tgtatccacattttttgttaaacttacaaacagctctaaccttccatttgtcgttctcggtaaattttatctctctgttatttaacacattgtgctcttg |
25362293 |
T |
|
| Q |
226 |
aacaacgtccttaaactggtgtcgagaagtaaactccattccaatactgaatttgaagtctttggtgatttcagcttctgcattgaacttatcatatttt |
325 |
Q |
| |
|
|||||| |||||||| | ||| |||||| |||||||||||| ||||||||||| ||||||||||||||||| | |||| |||||||||||||||||||| |
|
|
| T |
25362294 |
aacaacatccttaaatagttgtagagaagaaaactccattccgatactgaatttaaagtctttggtgatttctgtttctacattgaacttatcatatttt |
25362393 |
T |
|
| Q |
326 |
gg |
327 |
Q |
| |
|
|| |
|
|
| T |
25362394 |
gg |
25362395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University