View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15973_high_9 (Length: 283)
Name: NF15973_high_9
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15973_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 14 - 265
Target Start/End: Original strand, 15082243 - 15082494
Alignment:
| Q |
14 |
agaaaaggaatgctggatcatgagggctttttgagccaatccataatgaaatccaaagagaagttaaagaaactaaagggcaagtccaagaagaagaaaa |
113 |
Q |
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| T |
15082243 |
agaaaaggaatgctggatcatgagggctttttgagccaatccataatgaaatccaaagagaagttaaagaaactaaagggcaagtccaagaagaagaaaa |
15082342 |
T |
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| Q |
114 |
tgaatgatctacttggtgaattcatttatacgggtgaatttgatggaaatgtgagcgagagtgatctcgaagatctatcgtcgcttattggtgattaccg |
213 |
Q |
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| T |
15082343 |
tgaatgatctacttggtgaattcatttatacgggtgaatttgatggaaatgtgagcgagagtgatctcgaagatctatcgtcgcttattggtgattaccg |
15082442 |
T |
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| Q |
214 |
aaaagaagtcgacgagaggatcgaatcaagtcaaacctgaacccaagcctaa |
265 |
Q |
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| T |
15082443 |
aaaagaaatcgacgagaggatcgaatcaagtcaaacctgaacccaagcctaa |
15082494 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 189
Target Start/End: Original strand, 13315561 - 13315639
Alignment:
| Q |
111 |
aaatgaatgatctacttggtgaattcatttatacgggtgaatttgatggaaatgtgagcgagagtgatctcgaagatct |
189 |
Q |
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| T |
13315561 |
aaatgaataatataattggtcatttcagtcatacgggtgaatttgatgaaaatttgagcgagagtgatctcgaagatct |
13315639 |
T |
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