View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15973_low_18 (Length: 214)

Name: NF15973_low_18
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15973_low_18
NF15973_low_18
[»] chr6 (5 HSPs)
chr6 (26-198)||(33427550-33427721)
chr6 (26-110)||(18271665-18271749)
chr6 (5-107)||(12852243-12852345)
chr6 (60-110)||(9082149-9082199)
chr6 (34-111)||(12127250-12127327)
[»] chr7 (5 HSPs)
chr7 (34-116)||(35912175-35912257)
chr7 (5-106)||(23777021-23777122)
chr7 (34-110)||(27305494-27305570)
chr7 (31-111)||(43341016-43341096)
chr7 (15-84)||(10595945-10596014)
[»] chr3 (5 HSPs)
chr3 (20-93)||(37152701-37152774)
chr3 (34-110)||(36436038-36436114)
chr3 (5-54)||(41264850-41264899)
chr3 (68-114)||(25653597-25653643)
chr3 (26-111)||(55216840-55216920)
[»] chr4 (10 HSPs)
chr4 (26-110)||(327015-327099)
chr4 (16-84)||(43955647-43955715)
chr4 (26-110)||(44833914-44833998)
chr4 (47-108)||(34214453-34214514)
chr4 (17-110)||(42540179-42540272)
chr4 (19-110)||(10334109-10334200)
chr4 (26-112)||(23780212-23780298)
chr4 (16-61)||(4485284-4485329)
chr4 (16-61)||(10350577-10350622)
chr4 (5-110)||(23689392-23689497)
[»] chr2 (5 HSPs)
chr2 (5-105)||(5722756-5722856)
chr2 (26-110)||(27081069-27081153)
chr2 (31-110)||(33382053-33382132)
chr2 (5-61)||(36330496-36330552)
chr2 (26-84)||(14108777-14108835)
[»] chr1 (4 HSPs)
chr1 (9-110)||(22786629-22786730)
chr1 (31-84)||(32567093-32567146)
chr1 (31-110)||(5993538-5993617)
chr1 (26-86)||(8812400-8812460)
[»] chr5 (5 HSPs)
chr5 (8-84)||(16489136-16489212)
chr5 (16-110)||(34071377-34071471)
chr5 (31-84)||(10476569-10476622)
chr5 (31-69)||(29452333-29452371)
chr5 (36-84)||(5131335-5131383)
[»] chr8 (2 HSPs)
chr8 (31-112)||(35699693-35699769)
chr8 (16-107)||(2259758-2259844)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 2e-69; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 33427721 - 33427550
Alignment:
Q  26 ttcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccacccctaccaataaatatataa 125  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| |||||| |||||||||||||||||    
T  33427721 ttcaattcagttattttaaatttaacaaataattcagtttagttcggttcagttttcattccgaactgaacaatgtccaccc-taccaataaatatataa 33427623  T
Q  126 gcatgagagtaattgtaccctcactatatgaacttatgccctagctagaaatccactttcaggacattacatt 198  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  33427622 gtatgagagtaattgtaccctcactgtatgaacttatgccctagctagaaatcaactttcaggacattacatt 33427550  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 18271749 - 18271665
Alignment:
Q  26 ttcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    |||| ||||||||||||||||||| || | | |||| || ||||||||||||||||||| |||||| |||| |||||||||||||    
T  18271749 ttcagttcagttattttaaatttagcacacagttcagttcagttcggttcagttttcatccagaactgaaccatgcccaccccta 18271665  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 107
Target Start/End: Original strand, 12852243 - 12852345
Alignment:
Q  5 ttcaaaatacgaacagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgccca 104  Q
    |||||||||| ||| |||||||| | || |||| |||||||||||||||| |||| |  |  |||||||||||||||||| |  |||||||||||| |||    
T  12852243 ttcaaaatacaaacggttcgatttagtttagttgttttaaatttaacaaacaatttagatcggttcggttcagttttcatcccaaaccgaacaatgtcca 12852342  T
Q  105 ccc 107  Q
    |||    
T  12852343 ccc 12852345  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 9082149 - 9082199
Alignment:
Q  60 caatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    |||||| |||||||| ||||||||| | ||||||||| |||||||||||||    
T  9082149 caatttggttcggtttagttttcatcccgaaccgaaccatgcccaccccta 9082199  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 12127327 - 12127250
Alignment:
Q  34 agttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccacccctac 111  Q
    ||||||||| |||||  |||| | |||| |||||||||||| ||||||||| | ||||| ||| || |||||||||||    
T  12127327 agttattttgaatttcgcaaacagttcagtttagttcggttaagttttcatcccgaaccaaaccatacccacccctac 12127250  T

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Target: chr7 (Bit Score: 47; Significance: 5e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 34 - 116
Target Start/End: Original strand, 35912175 - 35912257
Alignment:
Q  34 agttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccacccctaccaata 116  Q
    ||||||||||||||||| ||| |||||| ||| |||||||| ||||||||||  |||| |||| |||||||||||||||||||    
T  35912175 agttattttaaatttaaaaaacaattcagtttggttcggtttagttttcatttcgaactgaaccatgcccacccctaccaata 35912257  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 23777122 - 23777021
Alignment:
Q  5 ttcaaaatacgaacagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgccca 104  Q
    |||||||||| |||| |||  |||| |||| |||||||||||||| |||| | |||| ||||||||| |||||||||| ||  |||| |||| |||||||    
T  23777122 ttcaaaatacaaacatttcagttcagttcaattattttaaatttagcaaacagttcagtttagttcgattcagttttcgtttcgaactgaaccatgccca 23777023  T
Q  105 cc 106  Q
    ||    
T  23777022 cc 23777021  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 27305570 - 27305494
Alignment:
Q  34 agttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    |||||||||||||||| |||| ||| || |||  ||||||||||||||||| | ||||||||| ||| |||||||||    
T  27305570 agttattttaaatttagcaaacaatgcagtttgattcggttcagttttcatcctgaaccgaaccatggccaccccta 27305494  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 111
Target Start/End: Complemental strand, 43341096 - 43341016
Alignment:
Q  31 ttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccacccctac 111  Q
    ||||||||||||||||||| |||| |||||| |||| || |||||||||||||| | |||| |||| || |||| ||||||    
T  43341096 ttcagttattttaaatttatcaaacaattcagtttaatttggttcagttttcatcccgaactgaaccattcccatccctac 43341016  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 10596014 - 10595945
Alignment:
Q  15 gaacagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcat 84  Q
    |||||||||  |||| ||||||||||||||||||| |||| | |||| || ||||||||| |||||||||    
T  10596014 gaacagttcagttcagttcagttattttaaatttagcaaacagttcagttcagttcggtttagttttcat 10595945  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 37152701 - 37152774
Alignment:
Q  20 gttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccg 93  Q
    ||||| |||| ||||||||||||||||||| |||| | ||||||||||||||||||| ||||||||| ||||||    
T  37152701 gttcggttcagttcagttattttaaatttagcaaacagttcaatttagttcggttcaattttcattctgaaccg 37152774  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 110
Target Start/End: Complemental strand, 36436114 - 36436038
Alignment:
Q  34 agttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    |||||||||||||||| |||| | |||||||| ||||||||| |||||||| | |||| |||| ||||||| |||||    
T  36436114 agttattttaaatttagcaaacagttcaatttggttcggttctgttttcatcccgaactgaaccatgcccatcccta 36436038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 41264899 - 41264850
Alignment:
Q  5 ttcaaaatacgaacagttcgattcacttcagttattttaaatttaacaaa 54  Q
    |||||||||| |||| ||||||||| |||| |||||||||||||||||||    
T  41264899 ttcaaaatacaaacaattcgattcagttcaattattttaaatttaacaaa 41264850  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 25653597 - 25653643
Alignment:
Q  68 ttcggttcagttttcattcagaaccgaacaatgcccacccctaccaa 114  Q
    ||||||||||||||||| | ||||||| | |||||||||||||||||    
T  25653597 ttcggttcagttttcatcccgaaccgagccatgcccacccctaccaa 25653643  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 55216840 - 55216920
Alignment:
Q  26 ttcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccacccctac 111  Q
    |||| |||||||||||||||||||||||||| |||     ||||| ||||||||||||| |  ||  |||| ||||||||||||||    
T  55216840 ttcagttcagttattttaaatttaacaaatagttc-----agttcagttcagttttcatccctaattgaaccatgcccacccctac 55216920  T

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Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 327099 - 327015
Alignment:
Q  26 ttcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    |||| ||||||||||||||||||| |||| |||||| |||||||||||||| ||||||| | ||||  ||| |||||||||||||    
T  327099 ttcagttcagttattttaaatttagcaaacaattcagtttagttcggttcatttttcatcccgaactcaaccatgcccaccccta 327015  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 43955647 - 43955715
Alignment:
Q  16 aacagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcat 84  Q
    |||||||||||| | ||||||||||||||||||||||| || || ||||  ||||||||||||||||||    
T  43955647 aacagttcgattaagttcagttattttaaatttaacaagtagtttaattcggttcggttcagttttcat 43955715  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 110
Target Start/End: Complemental strand, 44833998 - 44833914
Alignment:
Q  26 ttcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    |||| ||||||||||||||||||| |||| | ||||||||  ||||||||| ||||||| | ||||||||| || ||||||||||    
T  44833998 ttcagttcagttattttaaatttagcaaacagttcaatttgattcggttcaattttcatcccgaaccgaaccatacccaccccta 44833914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 108
Target Start/End: Complemental strand, 34214514 - 34214453
Alignment:
Q  47 ttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccacccc 108  Q
    |||||||| |||||| |||||||||||||||||||||| | ||||| ||| |||||||||||    
T  34214514 ttaacaaacaattcagtttagttcggttcagttttcatcccgaaccaaaccatgcccacccc 34214453  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 42540272 - 42540179
Alignment:
Q  17 acagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    |||||||  |||| |||| |||||||||||||| |||| |||||| || |||||||||| ||||||||   |||| |||| |||||||||||||    
T  42540272 acagttcagttcagttcaattattttaaatttagcaaacaattcagttcagttcggttctgttttcatctcgaactgaaccatgcccaccccta 42540179  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 110
Target Start/End: Complemental strand, 10334200 - 10334109
Alignment:
Q  19 agttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    ||||| ||||| |||| ||||||| ||||||||||| |||||| ||  ||||  ||||||||||||||  ||| |||| |||| ||||||||    
T  10334200 agttcaattcagttcaattattttgaatttaacaaacaattcagttcggttcaattcagttttcattccaaacagaaccatgcacaccccta 10334109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 112
Target Start/End: Complemental strand, 23780298 - 23780212
Alignment:
Q  26 ttcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccacccctacc 112  Q
    |||| |||| |||||||| ||||| |||| |||| | || | ||||||||||||||||| | |||| |||| ||| |||||||||||    
T  23780298 ttcagttcaattattttagatttagcaaacaattaagttcaattcggttcagttttcatcccgaactgaaccatgtccacccctacc 23780212  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 4485329 - 4485284
Alignment:
Q  16 aacagttcgattcacttcagttattttaaatttaacaaataattca 61  Q
    |||||||||||||| |||||||||||||||| || |||| ||||||    
T  4485329 aacagttcgattcatttcagttattttaaatctagcaaacaattca 4485284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 10350622 - 10350577
Alignment:
Q  16 aacagttcgattcacttcagttattttaaatttaacaaataattca 61  Q
    |||||||| ||||| |||| ||||||||||||||||||| ||||||    
T  10350622 aacagttcaattcagttcaattattttaaatttaacaaacaattca 10350577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 110
Target Start/End: Original strand, 23689392 - 23689497
Alignment:
Q  5 ttcaaaatacgaacagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgccca 104  Q
    |||||||| | |||| || |||||| |||| |||||||| ||||| |||| |||||| |||  ||| ||| ||||||||| | ||||| ||  |||||||    
T  23689392 ttcaaaatgcaaacaatttgattcaattcatttattttagatttagcaaacaattcattttgcttccgtttagttttcatcctgaacccaatcatgccca 23689491  T
Q  105 ccccta 110  Q
    ||||||    
T  23689492 ccccta 23689497  T

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Target: chr2 (Bit Score: 45; Significance: 8e-17; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 5722856 - 5722756
Alignment:
Q  5 ttcaaaatacgaacagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgccca 104  Q
    |||||||| | |||| |||  |||| ||||||||||||||||||| ||||||||||||||| |||||||||| ||||||| |  |||||||| ||| |||    
T  5722856 ttcaaaatgcaaacaattcagttcaattcagttattttaaatttagcaaataattcaatttggttcggttcacttttcatcccaaaccgaaccatgtcca 5722757  T
Q  105 c 105  Q
    |    
T  5722756 c 5722756  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 27081069 - 27081153
Alignment:
Q  26 ttcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    |||| ||||||||||||||||||| |||| | |||| || ||||||||||||||||||||| |||| ||||  ||||||||||||    
T  27081069 ttcaattcagttattttaaatttagcaaacagttcagttcagttcggttcagttttcattccgaactgaaccgtgcccaccccta 27081153  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 33382053 - 33382132
Alignment:
Q  31 ttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    ||||||||||||||| ||| |||| |||||| || |||||||||||||||| || | |||  |||| |||||||||||||    
T  33382053 ttcagttattttaaagttagcaaacaattcagttcagttcggttcagtttttatcccgaattgaaccatgcccaccccta 33382132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 36330496 - 36330552
Alignment:
Q  5 ttcaaaatacgaacagttcgattcacttcagttattttaaatttaacaaataattca 61  Q
    |||||||| | || ||||||||||| |||||||||||||| ||||||||||| ||||    
T  36330496 ttcaaaatgcaaatagttcgattcagttcagttattttaattttaacaaatagttca 36330552  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 14108777 - 14108835
Alignment:
Q  26 ttcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcat 84  Q
    |||| |||| ||||||||||||||| ||| | |||| || |||||||||||||||||||    
T  14108777 ttcaattcaattattttaaatttaataaacagttcagttcagttcggttcagttttcat 14108835  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 110
Target Start/End: Original strand, 22786629 - 22786730
Alignment:
Q  9 aaatacgaacagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccacccc 108  Q
    |||| ||||||||| | |||| |||| |||||||||||||| |||| | |||| ||  |||||||||||||||||| | ||||||||| |||| ||||||    
T  22786629 aaatgcgaacagtttggttcagttcaattattttaaatttagcaaacagttcagttcggttcggttcagttttcatcccgaaccgaaccatgcacacccc 22786728  T
Q  109 ta 110  Q
    ||    
T  22786729 ta 22786730  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 32567146 - 32567093
Alignment:
Q  31 ttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcat 84  Q
    ||||||||||||||||| || ||| |||||| ||||||||||||||||||||||    
T  32567146 ttcagttattttaaattcaataaacaattcagtttagttcggttcagttttcat 32567093  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 5993617 - 5993538
Alignment:
Q  31 ttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcat-tcagaaccgaacaatgcccaccccta 110  Q
    |||| |||||||||||||| | || ||||||||||||||||||||| ||||||| ||| |||||||| ||| |||||||||    
T  5993617 ttcaattattttaaatttagcgaacaattcaatttagttcggttcaattttcatctca-aaccgaaccatgtccaccccta 5993538  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 8812460 - 8812400
Alignment:
Q  26 ttcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattc 86  Q
    |||| |||||||||||||||||||| ||||| |||| ||| ||| |||| |||||||||||    
T  8812460 ttcaattcagttattttaaatttaataaatagttcagttttgtttggtttagttttcattc 8812400  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 84
Target Start/End: Complemental strand, 16489212 - 16489136
Alignment:
Q  8 aaaatacgaacagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcat 84  Q
    ||||||| ||| ||| |||||| |||| ||||||||||||||| |||||||||| ||  ||||||||||||||||||    
T  16489212 aaaatacaaaccgtttgattcagttcaattattttaaatttaataaataattcagttcggttcggttcagttttcat 16489136  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 34071377 - 34071471
Alignment:
Q  16 aacagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccccta 110  Q
    ||||||||| |||  ||||||||||||||||||| |||| |||||| |||  || |||| ||||||||  | ||||||||| ||| |||||||||    
T  34071377 aacagttcggttcgattcagttattttaaatttatcaaacaattcagtttgatttggtttagttttcaacccgaaccgaaccatgtccaccccta 34071471  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 10476569 - 10476622
Alignment:
Q  31 ttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcat 84  Q
    |||||||||||||||||||||||| | |||| ||| |||||||||| |||||||    
T  10476569 ttcagttattttaaatttaacaaacagttcagttttgttcggttcaattttcat 10476622  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 69
Target Start/End: Original strand, 29452333 - 29452371
Alignment:
Q  31 ttcagttattttaaatttaacaaataattcaatttagtt 69  Q
    |||||||||||||||||||||||| | ||||||||||||    
T  29452333 ttcagttattttaaatttaacaaacatttcaatttagtt 29452371  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 5131335 - 5131383
Alignment:
Q  36 ttattttaaatttaacaaataattcaatttagttcggttcagttttcat 84  Q
    |||||||||||||| |||||| || | || |||||||||||||||||||    
T  5131335 ttattttaaatttagcaaatagtttagttcagttcggttcagttttcat 5131383  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 35699693 - 35699769
Alignment:
Q  31 ttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccacccctacc 112  Q
    |||| |||||||||||||| |||| ||||||     |||||||||||||||||| | ||||||||| |||||||||||||||    
T  35699693 ttcaattattttaaatttatcaaacaattca-----gttcggttcagttttcatcccgaaccgaaccatgcccacccctacc 35699769  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 2259844 - 2259758
Alignment:
Q  16 aacagttcgattcacttcagttattttaaatttaacaaataattcaatttagttcggttcagttttcattcagaaccgaacaatgcccaccc 107  Q
    |||||||||||||  |||| |||||||||||||||||||     ||||| |||||||||||||||||||   ||||||||| || |||||||    
T  2259844 aacagttcgattcggttcaattattttaaatttaacaaa-----caattcagttcggttcagttttcatcttgaaccgaaccatacccaccc 2259758  T

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