View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15973_low_2 (Length: 658)
Name: NF15973_low_2
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15973_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 252 - 645
Target Start/End: Original strand, 34576605 - 34576999
Alignment:
| Q |
252 |
gcttacaattgtgggatccaaagtggtggtttactctactaaattattcatatttaggaagatcaaatatgttttccatacgacatgattc-tatatatt |
350 |
Q |
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| T |
34576605 |
gcttacaattgtaggatccaaagtggtggtttactctactaaattattcatatttaggaagatcaaatatgttttccatacaacatgattcatatatatt |
34576704 |
T |
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| Q |
351 |
atgaatacaatctcttcagagnnnnnnnnnttagttttttgttacttgcttgaacttagctaaataagtttgattatttgaattgaactagttgttgaag |
450 |
Q |
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| T |
34576705 |
atgaatacaatctcttcagagaaaaacaaattagttttttgttacttgcttgaacttagctaaataagtttgattatttgaattgaactagttgttgaag |
34576804 |
T |
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| Q |
451 |
gtagctactcattcacactttggttactttagactttagtttagagtatttaggaatgcatggatatataagcaaggtagtgtgtccacatttatataga |
550 |
Q |
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| T |
34576805 |
gtagctactcattcacactttgattactttagactttagtttagagtatttaggaatgcatggatatataagcaaggtagtatgtccacatttatataga |
34576904 |
T |
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| Q |
551 |
agtaagtctgttacagttgaaatgttcagatcagataggaataagtgacgatgctctttgaatgtcttattttttctttgccacattttcatctc |
645 |
Q |
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| T |
34576905 |
agtaagtctgttacagttgaaatgtttagatcagataggaataagtgacgatgctctttgaatgtcttattttttctttgccacattttcatctc |
34576999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 16 - 158
Target Start/End: Original strand, 34576461 - 34576603
Alignment:
| Q |
16 |
tcaagtttaaccaccattgatctggacttctttcatcggaaccctgaaaccaattagcactaatgaggagtctacgcacaaaatttttaaatttttaact |
115 |
Q |
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| T |
34576461 |
tcaagtttaaccaccattgatctggacttctttcatcagaaccctgaaaccaattagcactaatgaggagtctacgcacaaaatttttaaatttttaact |
34576560 |
T |
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| Q |
116 |
agtatgaaacttgcattttaggttttttgcgacgaggcttcaa |
158 |
Q |
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| T |
34576561 |
agtatgaaacttgcattttaggttttttgcgacgaagcttcaa |
34576603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 133
Target Start/End: Original strand, 19341468 - 19341560
Alignment:
| Q |
40 |
gacttctttcatcggaaccctgaaaccaattagcactaatgaggagtctacgcacaaaatttttaaatttttaactagtatgaaacttgcattt |
133 |
Q |
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| T |
19341468 |
gacttctatcatcgaaaccatacaaccaattagcatttatgaggagtttacacattaaa-aattaaatttttaactagtatgaaacttgcattt |
19341560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 62 - 128
Target Start/End: Original strand, 1793592 - 1793657
Alignment:
| Q |
62 |
aaaccaattagcactaatgaggagtctacgcacaaaatttttaaatttttaactagtatgaaacttg |
128 |
Q |
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| T |
1793592 |
aaaccaattagcaataatgagaagtctactcataaaa-atttaagtttttaaccagtatgaaacttg |
1793657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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