View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15973_low_3 (Length: 478)
Name: NF15973_low_3
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15973_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Complemental strand, 34287982 - 34287506
Alignment:
| Q |
1 |
gaggaaatctagcatcactcattttaacatacattcagacacattattttttattggttaaaatttatgagttccactaaatttatgagacccacgtaac |
100 |
Q |
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| T |
34287982 |
gaggaaatctagcatcactcattttaacatacattcagacacattatcttttattggttaaaatttatgagttccactaaatttatgagacccacgtaac |
34287883 |
T |
|
| Q |
101 |
ttggtgggacttatatgaatttcaagcaataaagaaagcgtgttggaa------------------tgggtgt-ggtagagggtgtcttcttagcattat |
181 |
Q |
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| T |
34287882 |
ttggtggaacttatatgaatttcaagcaataaagaaagcgtgttggaagacaccctctaccaaatttgcgtgttggtagagggtgtcttcttagcattat |
34287783 |
T |
|
| Q |
182 |
tcatcgcatgtaatattcaatattcacattatatggttcagtatgaaaaatattgaagtttgtctcaaatgctaagagggtgcaaccatattgacttgtg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34287782 |
tcatcgcatgtaatattcaatattcacattatatggttcagtatgaaaaatattgaagtttgtctcaaatgctaagagggtgcaaccatattgacttgtg |
34287683 |
T |
|
| Q |
282 |
tgggtgttgtcaaccagaggtatatgattatgatttctgtgcaagtatgttcagttatgtatttatgcagattccattatatttgattatgttttacaaa |
381 |
Q |
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| T |
34287682 |
--ggtgttgtcaaccagaggtatatgattataatttctgtgcaagtatgttcagttatgtatttctgcagattccattatatttgattatgttttacaaa |
34287585 |
T |
|
| Q |
382 |
tgcaatggcaacatggaaagaaaggattctatgttgaaccagtcttcataacttcataacagatgtgactacttccatg |
460 |
Q |
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| T |
34287584 |
tgcaatggcagcatggaaagaaaggattctatgttgaaccagtcttcataacttcatgactgatgtgactacttccatg |
34287506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 34297174 - 34297017
Alignment:
| Q |
30 |
tacattcagacacattattttttattggttaaaatt--tatgagttccactaaattta-tgagacccacgtaacttggtgggacttatatgaatttcaag |
126 |
Q |
| |
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|||||||| ||||||| | |||| |||||||||||| ||||||||||| |||||||| || |||| |||| ||||||| |||||||||||||||||| |
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| T |
34297174 |
tacattcaaacacattctctttttttggttaaaattcatatgagttccagtaaatttaatggaacccgtgtaatttggtggaacttatatgaatttcaag |
34297075 |
T |
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| Q |
127 |
caataaagaaagcgtgttggaatgggtgtggtagagggtgtcttcttagcattattcatc |
186 |
Q |
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| T |
34297074 |
caataaag--agtgtgttgaaatgtgtgtagtagagcgtgtcttcttagcattattcatc |
34297017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 54 - 135
Target Start/End: Complemental strand, 34281547 - 34281463
Alignment:
| Q |
54 |
ttggttaaaatt--tatgagttccactaaattt--atgagacccacgtaacttggtgggacttatatgaatttcaagcaataaaga |
135 |
Q |
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| T |
34281547 |
ttggttaaaattcatataagtttcactaaatttttatgggaccgacg-aacttggtgggacatatatgaatttcaagcaataaaga |
34281463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 192 - 422
Target Start/End: Original strand, 44179744 - 44179972
Alignment:
| Q |
192 |
taatattcaatattcacattatatggttcagtatgaaaaa-tattgaagtttgtctcaaatgctaagag----ggtgcaaccatattgacttgtgtgggt |
286 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || || |||||| ||| | |
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| T |
44179744 |
taatattctgtattcacattatatggttcagtacgaaaaaatattgaagtttgtctcgaacgctaagagtgagggtgcgacaattttgactggtggg--- |
44179840 |
T |
|
| Q |
287 |
gttgtcaaccagaggtatatgattatgatttctgtgcaagtatgttcagttatgtatttatgcagattccattatatttgattatgttttacaaatgcaa |
386 |
Q |
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| || ||||||||||| ||||||| ||||||||||||| |||||||||| |||||| ||||| |||||| ||| |||||||||||||| |||||| | |
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| T |
44179841 |
--tctcgaccagaggtat--gattatgctttctgtgcaagtgtgttcagttaggtatttctgcagtttccatgataattgattatgttttataaatgcga |
44179936 |
T |
|
| Q |
387 |
tggcaacatggaaagaaaggattctatgttgaacca |
422 |
Q |
| |
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||||| ||| |||||||||||||| |||||||||| |
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| T |
44179937 |
tggcagcatctaaagaaaggattctttgttgaacca |
44179972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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