View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15973_low_4 (Length: 458)
Name: NF15973_low_4
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15973_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 14 - 157
Target Start/End: Complemental strand, 4657725 - 4657582
Alignment:
| Q |
14 |
ttctcatgaaatccatagcctcttgtataggccttgttaattcctctctatacttcacaagcatgtcataatatgcttcctgttaaacataaacataaac |
113 |
Q |
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| T |
4657725 |
ttctcatgaaatccatagcctcttgtataggccttgttaattcctctctatacttcacaagcatatcataatatgcttcctgttaaacataaacataaac |
4657626 |
T |
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| Q |
114 |
accatttcaacgtccaaaaccacaatctataagttctataaata |
157 |
Q |
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| T |
4657625 |
accatttcaacgtccaaaaccacaatctataagttctataaata |
4657582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 306 - 443
Target Start/End: Complemental strand, 4657459 - 4657322
Alignment:
| Q |
306 |
tacccccttgtaccatgaattggtctagttctggatctttagaagtttctctcgagttaactgaagatctttgccgtgcttcaaattcttgcctagacgc |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4657459 |
tacccccttgtaccatgaattggtctagttctggatctttagaagtttctctcgagttaactgaagatctttgccgtgcttcaaattcttgcctagacgc |
4657360 |
T |
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| Q |
406 |
aaccaaacgagccaccacttcaggtggagctccaatct |
443 |
Q |
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| T |
4657359 |
aaccaaacgagccaccacttccggtggagctccaatct |
4657322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 170 - 242
Target Start/End: Complemental strand, 4657595 - 4657523
Alignment:
| Q |
170 |
aagttctataaatatagatacagtaatcaactagatttttgccgacataatttaaacttattgattatcaaga |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4657595 |
aagttctataaatatagatacagtaatcaactagatttttgccgacataatttaaacttattgattatcaaga |
4657523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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