View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15973_low_5 (Length: 422)
Name: NF15973_low_5
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15973_low_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Original strand, 27697983 - 27698366
Alignment:
| Q |
17 |
atatttgatacctagaaatcaaaattataaccacacaattttctaattttaattcaaaatgtgccctatgataagattttgtaagacaatgcaactttac |
116 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27697983 |
atatttgatacctagaaatcaaaatttaaaccacacaattttctaattttaattcaaaatgtgccctatgataagattttgtaagacaatgcaactttac |
27698082 |
T |
|
| Q |
117 |
tattaacatttagtagtacatttctttctggtgtgggtgtgaaaatggtctaaactctaaacagttattcggtcaaagtgtccaatttaattgttggcaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27698083 |
cattaacatttagtagtacatttctttctggtgtgggtgtgaaaatggtctaaactctaaacagttattcggtcaaagtgtccaatttaattattggcaa |
27698182 |
T |
|
| Q |
217 |
gcaaactgtagagataaaacaacatctgtatagcttgacagagcaataactgtgaaaaaatttcaaaaacacaaatattttaataaccaattgtaaaata |
316 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27698183 |
gcaaactgtggagataaaacaacatctgtatagcttgacagagcaataactgtgaaaaaatttcagaaacacaaatattttaataaccaattgtaaaata |
27698282 |
T |
|
| Q |
317 |
gaccaaagacaatgacattcatataataaatgtttcaaaatttatgaatatctagtcctataatacctttgccccctgccccct |
400 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27698283 |
gaacaaagacaatgacattcatataataaatgtttcaaaatttatgaatatctagtcctataatacctttgccccctgccccct |
27698366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University