View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15973_low_7 (Length: 365)
Name: NF15973_low_7
Description: NF15973
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15973_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 342
Target Start/End: Complemental strand, 15279568 - 15279243
Alignment:
| Q |
18 |
aggtctcgatgattttttgttgaaagtttctcgctctaacggaggtgacgatgttggattctacaaattcctctggtaagaatttttcacaagttgttcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |
|
|
| T |
15279568 |
aggtctcgatgattttttgttgaaagtttctcgctctaacggaggtgacgatgttggattctacaaattcctctggtaagacttttgcacaagttgttcc |
15279469 |
T |
|
| Q |
118 |
ctaggaatgtgacctgcaattaagccaattatcagaaaatgccgggagaggactgctgatgattggtttccttcccgtgtgcgtgatga-acctgaagaa |
216 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15279468 |
ctaggaatgtgacctacaattaagcatattatcagaaaatgccgggagaggactactgatgattggtttccttcccgtgtgcgtgatgagccctgaagaa |
15279369 |
T |
|
| Q |
217 |
gaaaatgagactcctttcagttggaagaaggtttcacaagtaaataaaggcaagcaagtagaggctccatctccaatacatcctaggagtcttcctcctt |
316 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||| ||| |||||||| ||| ||| ||||||||||||||||||||| |
|
|
| T |
15279368 |
gaaaacgagactcctttcagtaggaagaaggttgcacaagtagataaaggcaagctagttcaggctccagctctaatgcatcctaggagtcttcctcctg |
15279269 |
T |
|
| Q |
317 |
ctgatgacggtttgttccagcttccc |
342 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
15279268 |
gtgatgacggtttgttccagcttccc |
15279243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University