View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15974_high_12 (Length: 268)
Name: NF15974_high_12
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15974_high_12 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 40284042 - 40283792
Alignment:
| Q |
1 |
ttgcacgtctttattgctgaggcctgcagaaggtcattgtgcaaataaagtcagaatttttcccagcagagtagggnnnnnnnnnnnnnnnttctacttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
40284042 |
ttgcacgtctttattgctgaggcctgcagaaggtcattgtgcaaataaagtcagaatttttcccagcagagtagggaaaataaataaact-ttctacttt |
40283944 |
T |
|
| Q |
101 |
cacatcacttttagagccatttttcaaataaatggaccattggaccagcaatgttttttctcccaactaaccatcaatcgtattgatgaaaagatggatg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40283943 |
cacatcacttttagagccatttttcaaataaatggaccattggaccagcgatgttttttctcccaactaaccatcaatcgtattgatgaaaagatggatg |
40283844 |
T |
|
| Q |
201 |
aggactatcctgatattttatcgggtcttcatttgatatccatgatgaatat |
252 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40283843 |
aggactatcctgatattttatcggatcttcatttgatatccatgatgaatat |
40283792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University