View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15974_high_15 (Length: 238)
Name: NF15974_high_15
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15974_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 51150806 - 51150599
Alignment:
| Q |
19 |
taattaactatttgagttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctct |
118 |
Q |
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| T |
51150806 |
taattaactatttgagttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctct |
51150707 |
T |
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| Q |
119 |
agtnnnnnnnnnctaggatcgttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctg |
218 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51150706 |
agtaaaagaaaactaggatctttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctg |
51150607 |
T |
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| Q |
219 |
cgaaatct |
226 |
Q |
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| T |
51150606 |
caaaatct |
51150599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 51163107 - 51162900
Alignment:
| Q |
19 |
taattaactatttgagttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51163107 |
taattaactatttgagttatttatttactgttgatgttatttagaagtcaatatatgatttatagtagttagaaattacttgtttacaagacgcagctct |
51163008 |
T |
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| Q |
119 |
agtnnnnnnnnnctaggatcgttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctg |
218 |
Q |
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||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51163007 |
agtaaaagaaaactaggatctttcatttgttcaatttacagaagagaaagaaaagaagcatatagttatatgtcctcggatagacacatgcacttacctg |
51162908 |
T |
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| Q |
219 |
cgaaatct |
226 |
Q |
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| T |
51162907 |
caaaatct |
51162900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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