View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15974_high_4 (Length: 723)
Name: NF15974_high_4
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15974_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 242 - 708
Target Start/End: Original strand, 21832797 - 21833263
Alignment:
| Q |
242 |
caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcaccaacgttaccgtctttttgtgtt |
341 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21832797 |
caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcactaacgttaccgtctttttgtgtt |
21832896 |
T |
|
| Q |
342 |
cacagtttctacagttttcacgacttcgcaaaaccatggttacaacaacacattcatattcatacttacctgatgactgttggaaatgcatcttcaaatt |
441 |
Q |
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||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832897 |
cacggtttctgcagttttcacgacttcgcaaaaccatggttacaacaacacattcaaattcatacttacctgatgactgttggaaatgcatcttcaaatt |
21832996 |
T |
|
| Q |
442 |
catcatcgacgacgacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactg |
541 |
Q |
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|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832997 |
catcatcgacgaggacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactg |
21833096 |
T |
|
| Q |
542 |
actgtcctcaatccaacacgccctctcatccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacctcgaca |
641 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
21833097 |
actgtcctcaatccaacacgccctctcatccgtcccctcttcaaaagattcaccaaccttacctcccttaacctctctcgcttccacggtgacctcaaca |
21833196 |
T |
|
| Q |
642 |
accttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacc |
708 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21833197 |
accttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacc |
21833263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 21832402 - 21832497
Alignment:
| Q |
141 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatccgttacc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
21832402 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatctgttacc |
21832497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 21832285 - 21832347
Alignment:
| Q |
22 |
agtgtggagaaataagtgttgccgataatccatttcctaattgaatgaagttgaattttatgt |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
21832285 |
agtgtggagaaataagtgttgccgataatccatttcccaattgaatgaagttgaattttatgt |
21832347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 468 - 708
Target Start/End: Complemental strand, 10616023 - 10615783
Alignment:
| Q |
468 |
gtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaacacgccctct |
567 |
Q |
| |
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||||||||||| || |||||||| ||||||||| ||| |||||||||||| | | | | || || ||||| ||| || ||||||||||||||||| | |
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| T |
10616023 |
gtcgctacttgaattctctctcccttgtctccaagcaactcctctccatcaccaaccggatccggttctcactcactatcttcaatccaacacgcccttt |
10615924 |
T |
|
| Q |
568 |
catccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacctcgacaaccttctccgtcaaatctctcgtttc |
667 |
Q |
| |
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| | | | |||||| ||||| ||||| || |||| ||||| |||||| | ||||||||||||||||| ||| |||||||| |||||||||||||| |
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| T |
10615923 |
cctttgcctcctctttaaaagattcacaaaccttaattccctcaacctcacacgcttccacggtgaccttgacgctcttctccgcaaaatctctcgtttc |
10615824 |
T |
|
| Q |
668 |
ccatcattgaacatcaagtcactcaatatctccaacaaacc |
708 |
Q |
| |
|
|||||||||||||||| ||||| ||||| |||||| |||| |
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| T |
10615823 |
ccatcattgaacatcacatcacttaatatttccaaccaacc |
10615783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 471 - 708
Target Start/End: Complemental strand, 6417399 - 6417162
Alignment:
| Q |
471 |
gctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaacacgccctctcat |
570 |
Q |
| |
|
|||||||| || ||||||| ||||||||| ||| |||||||||||| | | | ||||||| |||||||| |||||||||||||||||||| || | |
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| T |
6417399 |
gctacttgaattttctctcccttgtctccaagcaactcctctccatcaccaaccgaattcgattcacactgactatcctcaatccaacacgccctttcct |
6417300 |
T |
|
| Q |
571 |
ccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacctcgacaaccttctccgtcaaatctctcgtttccca |
670 |
Q |
| |
|
||| |||||| ||||| ||||| || |||| ||||| |||||| | ||||| || || ||||| || ||||||||| ||||||||||||| ||| |
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| T |
6417299 |
ttgtcgcctctttaaaagattcacaaaccttaattccctcaacctcacacgctttcatggcgaccttgatgctcttctccgtaaaatctctcgttttcca |
6417200 |
T |
|
| Q |
671 |
tcattgaacatcaagtcactcaatatctccaacaaacc |
708 |
Q |
| |
|
||||||||||||| ||||| |||||||||||| |||| |
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| T |
6417199 |
tcattgaacatcacatcacttaatatctccaaccaacc |
6417162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 700
Target Start/End: Original strand, 6588179 - 6588248
Alignment:
| Q |
631 |
tgacctcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctcc |
700 |
Q |
| |
|
|||||||||| ||||||| | |||||||||||||||||| ||||||| |||| ||||||||| ||||| |
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| T |
6588179 |
tgacctcgacgaccttctttgccaaatctctcgtttcccaacattgaaaatcacttcactcaatctctcc |
6588248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 6433220 - 6433175
Alignment:
| Q |
397 |
atattcatacttacctgatgactgttggaaatgcatcttcaaattc |
442 |
Q |
| |
|
||||||| | |||||||||||||||||| |||||||||||| |||| |
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|
| T |
6433220 |
atattcaaatttacctgatgactgttgggaatgcatcttcagattc |
6433175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 536 - 708
Target Start/End: Original strand, 13469463 - 13469635
Alignment:
| Q |
536 |
tcactgactgtcctcaatccaacacgccctctcatccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacc |
635 |
Q |
| |
|
||||| ||| ||||||||||||||| |||| || | ||| |||||| ||||| ||||| || |||| || || |||||| | |||||||| || |||| |
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|
| T |
13469463 |
tcactcactatcctcaatccaacacaccctttcctttgtcgcctctttaaaagattcacaaaccttaattcactcaacctcacacgcttccatggggacc |
13469562 |
T |
|
| Q |
636 |
tcgacaaccttctccgtcaaatctctcgtttcccatcattgaacatcaagtcactcaatatctccaacaaacc |
708 |
Q |
| |
|
| ||| |||||||| |||||||||| ||| ||||||||||||||| ||||| ||| |||||||| |||| |
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|
| T |
13469563 |
ttgacgctcttctccgcaaaatctctcgcttctcatcattgaacatcacatcacttaatctctccaaccaacc |
13469635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 433 - 518
Target Start/End: Original strand, 45055773 - 45055858
Alignment:
| Q |
433 |
cttcaaattcatcatcgacgacgacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatca |
518 |
Q |
| |
|
|||||||||| ||||||| ||| || |||||||| ||| |||||| | |||||||| ||||||||||| ||||||||||||| |
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|
| T |
45055773 |
cttcaaattcctcatcgatgactacaacaacaatagtccctacttagagtctctctccctcgtctccaaacacttcctctccatca |
45055858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 459 - 600
Target Start/End: Complemental strand, 28533138 - 28532997
Alignment:
| Q |
459 |
acaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaac |
558 |
Q |
| |
|
||||||| |||||| ||||| | |||||||| | || ||||||| ||||||||||||| || | || ||||| ||||| ||| || |||||||||| |
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|
| T |
28533138 |
acaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcctctccatcaccggacgcctccgattctcactcactctcgtcaatccaac |
28533039 |
T |
|
| Q |
559 |
acgccctctcatccgtcccctcttcaaaaggttcaccaatct |
600 |
Q |
| |
|
|| |||| || | | | ||||||||||||||||||| |||| |
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|
| T |
28533038 |
accccctttcctacttagcctcttcaaaaggttcacccatct |
28532997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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