View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15974_high_6 (Length: 654)
Name: NF15974_high_6
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15974_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 381; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 413
Target Start/End: Complemental strand, 21833209 - 21832797
Alignment:
| Q |
1 |
tgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagagggcgtgttg |
100 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21833209 |
tgacggagaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggtgaatcttttgaagaggggacggatgagagggcgtgttg |
21833110 |
T |
|
| Q |
101 |
gattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21833109 |
gattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgtc |
21833010 |
T |
|
| Q |
201 |
gtcgtcgatgatgaatttgaagatgcatttccaacagtcatcaggtaagtatgaatatgaatgtgttgttgtaaccatggttttgcgaagtcgtgaaaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21833009 |
ctcgtcgatgatgaatttgaagatgcatttccaacagtcatcaggtaagtatgaatttgaatgtgttgttgtaaccatggttttgcgaagtcgtgaaaac |
21832910 |
T |
|
| Q |
301 |
tgtagaaactgtgaacacaaaaagacggtaacgttggtgcaaaaatggtgctggcggtgacacaaaaatattagggtttggagttaggttatgtttttat |
400 |
Q |
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|| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832909 |
tgcagaaaccgtgaacacaaaaagacggtaacgttagtgcaaaaatggtgctggcggtgacacaaaaatattagggtttggagttaggttatgtttttat |
21832810 |
T |
|
| Q |
401 |
tgttacgggtttg |
413 |
Q |
| |
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||||||||||||| |
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| T |
21832809 |
tgttacgggtttg |
21832797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 419 - 514
Target Start/End: Complemental strand, 21832497 - 21832402
Alignment:
| Q |
419 |
ggtaacggatggtgaaacaaatgttagggtttgtagttaggttatggttgtactgttgcgttactgaatgatccttggagttaggttatatttacg |
514 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21832497 |
ggtaacagatggtgaaacaaatgttagggtttgtagttaggttatggttgtactgttgcgttactgaatgatccttggagttaggttatatttacg |
21832402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 571 - 633
Target Start/End: Complemental strand, 21832347 - 21832285
Alignment:
| Q |
571 |
acataaaattcaacttcattcaattaggaaatggattatcggcaacacttatttctccacact |
633 |
Q |
| |
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| T |
21832347 |
acataaaattcaacttcattcaattgggaaatggattatcggcaacacttatttctccacact |
21832285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 10615855 - 10616023
Alignment:
| Q |
19 |
aggtcaccgtggaagcgagagaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtg |
118 |
Q |
| |
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||||||||||||||||| | |||||| ||||| |||| || ||||| ||||| |||||| | | | || ||||||||||||||||| || ||| |||| |
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| T |
10615855 |
aggtcaccgtggaagcgtgtgaggttgagggaattaaggtttgtgaatcttttaaagaggaggcaaaggaaagggcgtgttggattgaagatagtgagtg |
10615954 |
T |
|
| Q |
119 |
ataatcgaagaggatcgatgatggagaggaattgtttggagacagcggagagaggatacaagtagcgac |
187 |
Q |
| |
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| || || | | | | |||||||||||| ||| ||||||||| |||||||| || ||||||||||| |
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| T |
10615955 |
agaaccggatccggttggtgatggagaggagttgcttggagacaagggagagagaattcaagtagcgac |
10616023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 6417254 - 6417399
Alignment:
| Q |
39 |
gaggttaagggaggtaagattggtgaaccttttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatg |
138 |
Q |
| |
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|||||| ||||| |||| || ||||| ||||| |||||| ||| | || |||||||||||||||||||| |||||||| ||||||| | | | || |
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| T |
6417254 |
gaggttgagggaattaaggtttgtgaatcttttaaagaggcgacaaaggaaagggcgtgttggattgaggatagtcagtgtgaatcgaattcggttggtg |
6417353 |
T |
|
| Q |
139 |
atggagaggaattgtttggagacagcggagagaggatacaagtagc |
184 |
Q |
| |
|
|||||||||| ||| ||||||||| ||||||| || |||||||| |
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| T |
6417354 |
atggagaggagttgcttggagacaagggagagaaaattcaagtagc |
6417399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 6433175 - 6433220
Alignment:
| Q |
213 |
gaatttgaagatgcatttccaacagtcatcaggtaagtatgaatat |
258 |
Q |
| |
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|||| |||||||||||| |||||||||||||||||| | ||||||| |
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| T |
6433175 |
gaatctgaagatgcattcccaacagtcatcaggtaaatttgaatat |
6433220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 222
Target Start/End: Complemental strand, 45055858 - 45055773
Alignment:
| Q |
137 |
tgatggagaggaattgtttggagacagcggagagaggatacaagtagcgacgattgttgtcgtcgtcgtcgatgatgaatttgaag |
222 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| | |||||| ||| |||||||| || ||| ||||||| |||||||||| |
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| T |
45055858 |
tgatggagaggaagtgtttggagacgagggagagagactctaagtagggactattgttgttgtagtcatcgatgaggaatttgaag |
45055773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 196
Target Start/End: Original strand, 28532997 - 28533138
Alignment:
| Q |
55 |
agattggtgaaccttttgaagaggggacggatgagagggcgtgttggattgaggacagtcagtgataatcgaagaggatcgatgatggagaggaattgtt |
154 |
Q |
| |
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|||| ||||||||||||||||||| | | | || |||| |||||||||||| || ||| ||||| ||||| || | || ||||||||||||| ||| |
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| T |
28532997 |
agatgggtgaaccttttgaagaggctaagtaggaaagggggtgttggattgacgagagtgagtgagaatcggaggcgtccggtgatggagaggaaccgtt |
28533096 |
T |
|
| Q |
155 |
tggagacagcggagagaggatacaagtagcgacgattgttgt |
196 |
Q |
| |
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|||| || | |||||||| | ||||| |||||| ||||||| |
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| T |
28533097 |
tggatacggtggagagagaactcaagttgcgacggttgttgt |
28533138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 30827961 - 30828001
Alignment:
| Q |
37 |
gagaggttaagggaggtaagattggtgaaccttttgaagag |
77 |
Q |
| |
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||||||| |||||||| ||||||||||||||||||||||| |
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| T |
30827961 |
gagaggtcgagggaggtgagattggtgaaccttttgaagag |
30828001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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