View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15974_high_7 (Length: 566)
Name: NF15974_high_7
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15974_high_7 |
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| [»] scaffold1515 (1 HSPs) |
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| [»] scaffold1889 (1 HSPs) |
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| [»] scaffold1723 (1 HSPs) |
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Alignment Details
Target: scaffold1515 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: scaffold1515
Description:
Target: scaffold1515; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 187 - 1
Alignment:
| Q |
1 |
ggtttcatcaccaaagatcgttgttccagcagctttgaccggtaccggaagatttgagactgcatcattatacgttggtgatctcgaacggaacgtgaat |
100 |
Q |
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| T |
187 |
ggtttcatcaccaaagatcgttgttccagcagctttgaccggtactggaagatttgagaccgcttccttatacgttggtgatctcgaaaggaacgtcaat |
88 |
T |
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| Q |
101 |
gagagccagctttatgatctgttcagtcagattgcaccagtgctttctgctagggtttgccgggatcagatgacgcagtcatctctt |
187 |
Q |
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| T |
87 |
gagggccagctttatgatctgttcagtcagattgcaccagtgctttctgctagggtttgccgggatcagatgacgcagtcatctctt |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 14408721 - 14408485
Alignment:
| Q |
2 |
gtttcatcaccaaagatcgttgttccagcagctttgaccggtaccggaagatttgagactgcatcattatacgttggtgatctcgaacggaacgtgaatg |
101 |
Q |
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| T |
14408721 |
gtttcatcaccaaagatcgttgttccagcagctttgaccagtgctggaagatttgagaattcttctttgtacgtcggtgatcttcaagggaacgtaaatg |
14408622 |
T |
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| Q |
102 |
agagccagctttatgatctgttcagtcagattgcaccagtgctttctgctagggtttgccgggatcagatgacgcagtcatctcttggatatggctatgt |
201 |
Q |
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| T |
14408621 |
atgcgcagctgtatgatctgttcagccagattgcccctgtgatttctgttagggtttgcagagatcagatgacgcagtcatctcttggttatggctatgt |
14408522 |
T |
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| Q |
202 |
taactactccaacgctcgtgatggtttgtatttcgag |
238 |
Q |
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| T |
14408521 |
taactactccaacgctcgtgatggtttgtatttcgag |
14408485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 395 - 462
Target Start/End: Complemental strand, 14408325 - 14408258
Alignment:
| Q |
395 |
taagggttaggtttttcaaaacttattgcaaatcttaattaaatttgatgcctatatatgattactaa |
462 |
Q |
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| T |
14408325 |
taagggttaggtttttcaaaacttattgcaaatcttaattaaatttgatgactatatatgattactaa |
14408258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1889 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold1889
Description:
Target: scaffold1889; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 53 - 227
Target Start/End: Original strand, 845 - 1019
Alignment:
| Q |
53 |
tttgagactgcatcattatacgttggtgatctcgaacggaacgtgaatgagagccagctttatgatctgttcagtcagattgcaccagtgctttctgcta |
152 |
Q |
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||||||| ||| ||||| |||||||||||||| ||| |||| ||||||||| |||||||||||| | || |||||||| | || |||| | | |
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| T |
845 |
tttgagaatgcttcattgtacgttggtgatcttgaaaggaaggtgaatgaggcccagctttatgaacctctctatcagattggccacgttatttccgtca |
944 |
T |
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| Q |
153 |
gggtttgccgggatcagatgacgcagtcatctcttggatatggctatgttaactactccaacgctcgtgatggtt |
227 |
Q |
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| T |
945 |
gggtttgtagggatcagatgacgcagtcatctcttggttatggctatgtcaacttctccaacgctcgtgatggtt |
1019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1723 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1723
Description:
Target: scaffold1723; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 516
Target Start/End: Complemental strand, 727 - 691
Alignment:
| Q |
480 |
agtaaaagcctagtatttataatcatgtttttaagtc |
516 |
Q |
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| T |
727 |
agtaaaaccctagtatttataatcatgtttttaagtc |
691 |
T |
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