View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15974_high_8 (Length: 548)
Name: NF15974_high_8
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15974_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 5 - 419
Target Start/End: Complemental strand, 43770383 - 43769969
Alignment:
| Q |
5 |
ctcatcagacaagggagggaactcacccgtgaatttccaatcagtcattgaaagaccagatctagtgagtctggttaaacccccaagtatgaccatagta |
104 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43770383 |
ctcatcagacaaaggagggaactcacccgtgaatttccaatcagtcattgaaagaccagatctagtgagtctggttaaacccccaagtatgaccatagta |
43770284 |
T |
|
| Q |
105 |
aacacccatgcagcagagccaaagagccatattccaaccaccttctgtgcatgagaacctcctgtcacgagcagtttcaacccctccttatgtatggccc |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43770283 |
aacacccatgcagcagagccaaagagccatattccaaccaccttctgtgcatgagaacctcctgtcacgagcagtttcaacccctcgttatgtatggccc |
43770184 |
T |
|
| Q |
205 |
cagcagacaccgtcttagaaacacgatgaccctatgagcaccacaacagttttctcagaactcagaactaagccaatatacatactaaacattcacacaa |
304 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
43770183 |
cagcagacactgtcttagaaacacgatgaccctaagagcaccacaacagttttctcagaactcagaactaagccaatatacatactaaacaatcacacaa |
43770084 |
T |
|
| Q |
305 |
aacattggcgataaaaacatgaacaaaagaaactattttcccataacgccattgacatttcacagataaaaatcaattcgactaaacatctttcaacaaa |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43770083 |
aacattggcgataaaaacatgaacaaaagaaagtattttcccataacgccattgacatttcacagataaaaatcaattcaactaaacatctttcaacaaa |
43769984 |
T |
|
| Q |
405 |
cagttataggataaa |
419 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
43769983 |
cagttatagggtaaa |
43769969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 9e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 9e-90
Query Start/End: Original strand, 18 - 411
Target Start/End: Complemental strand, 42356583 - 42356174
Alignment:
| Q |
18 |
ggagggaactcacccgtgaatttccaatcagtcattgaaagaccagatctagtgagtctggttaaacccccaagtatgaccatagtaaacacccatgcag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |
|
|
| T |
42356583 |
ggagggaactcacccgtgaatttccaatcagtcattgaaagaccggatctagtgagtctggttaaacccccaagtaccaccatactaaacacccacgcag |
42356484 |
T |
|
| Q |
118 |
cagagccaaagagccatattccaaccaccttctgtgcatgagaacctcctgtcacgagcagtttcaacccctccttatgtatggccccagcagacaccgt |
217 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||| ||||| |||| |||||||||||||||| |
|
|
| T |
42356483 |
cagagccaaatagccatattccaaccgccttctgtgcgcgagaacctcctgtcacaagcagcttcaa---ctcctcatgtttggccccagcagacactac |
42356387 |
T |
|
| Q |
218 |
cttagaa------------------acacgatgaccctatgagcaccacaacagttttctcagaactcagaactaagccaa-tatacatactaaacattc |
298 |
Q |
| |
|
| ||||| ||| ||||||||| || ||||||||| ||||||||||||||||||||||| | || ||||||||| ||||| || |
|
|
| T |
42356386 |
cgtagaaaagttcctcgtgaatggcacatgatgaccctgagaacaccacaactgttttctcagaactcagaactaaacaaactatacatacgaaacagtc |
42356287 |
T |
|
| Q |
299 |
acacaaaacattggcgataaaaacatgaacaaaagaaactattttcccataacgccattgacatttcacagataaaaatcaattcgactaaacatctttc |
398 |
Q |
| |
|
| |||||||||||| ||||||| ||||||||| |||| |||||||||||| | |||||||||||||||| ||||| ||| |||||| ||||||||| | |
|
|
| T |
42356286 |
aaacaaaacattggtgataaaatcatgaacaatagaagctattttcccatgataccattgacatttcacacataaatatctattcgaataaacatctcac |
42356187 |
T |
|
| Q |
399 |
aacaaacagttat |
411 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
42356186 |
aacaaccagttat |
42356174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University