View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15974_low_10 (Length: 398)
Name: NF15974_low_10
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15974_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 373
Target Start/End: Original strand, 9566683 - 9567056
Alignment:
| Q |
1 |
tataataacctacaaaaggaagaggaacacagccaaatctcaagtcctatccagagacttggtcgctaaagatnnnnnnnnnnnngaagaacgaacaaca |
100 |
Q |
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| T |
9566683 |
tataataacctacaaaaggaagaggaacatagctaaatctcaagtcctatccagaaacttggtcgctaaagataaaaaagaaaaagaagaacgaacaaca |
9566782 |
T |
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| Q |
101 |
aaagtatgtctatagacctatgatagtgagtcaagtcggcccaagcatcagacaagtctttgctt-aagccgctcggttcaccctatttaacactcctac |
199 |
Q |
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| T |
9566783 |
aaagtatgtctatagacctatgatagcaagtcaagtcggcccaagcatcagacaagtctttgctttaagccgctcggttc-ccctatttaacactcctac |
9566881 |
T |
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| Q |
200 |
atagtctatttattctacgatcttacctacatttcggtatcgaacaaaatttgcacatgcgaatgtgctctcatgatttcaatccttgtctaactttagg |
299 |
Q |
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| T |
9566882 |
atagtctatttattctacgatcttacctacattttggtatcgaacaaaatttgcacatacgaatgtgctctcatgatttcaatccttgtctaactttaag |
9566981 |
T |
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| Q |
300 |
cctcaccttgtctcgagtcggccc-gtcaataacatctccaagcagaagatgtgcacataactttactctcccac |
373 |
Q |
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| T |
9566982 |
cctcatcttgtgtcgagtcggccctgtcaataacatctccaagcagaagatgtgcacataactttactcttccac |
9567056 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 398
Target Start/End: Original strand, 52542943 - 52542976
Alignment:
| Q |
365 |
ctctcccacccataatttccaaacaatctttccc |
398 |
Q |
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| T |
52542943 |
ctctcccactcataatttccaaacaatctttccc |
52542976 |
T |
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