View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15974_low_11 (Length: 396)
Name: NF15974_low_11
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15974_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 1196780 - 1197169
Alignment:
| Q |
1 |
tccaagaatattaattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctctt |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196780 |
tccaataatattaattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctctt |
1196879 |
T |
|
| Q |
101 |
caatgctaattgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1196880 |
caatgctaattgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcaca |
1196979 |
T |
|
| Q |
201 |
aggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatattcagttggtatg |
300 |
Q |
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| T |
1196980 |
aggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatattcagttggtatg |
1197079 |
T |
|
| Q |
301 |
atgaacctcttaagctcttctccaacacaaacagctaaatacccttttggaacagaaccattgttgtttgatgatgttgttcctccttca |
390 |
Q |
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| T |
1197080 |
atgaacctcttaagctcttctccaacacaaacagctaaatatccttttggaacagaaccattgttgtttgatgatgttgttcctccttca |
1197169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 11 - 390
Target Start/End: Complemental strand, 7289790 - 7289410
Alignment:
| Q |
11 |
ttaattattatatttatctacacaatggactttgaggatgatgagaacaagcaagttgattttctaaagaacaataacccatcatctcttcaatgctaat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||| |||||| |||||||||| ||| |
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| T |
7289790 |
ttaattattatatttatctacacaatggactttgaggatgatgagaacaaacgagttaattttctaaagaacaataactcatcatttcttcaatgccaat |
7289691 |
T |
|
| Q |
111 |
tgatctacattcttgatttgaaaacttgtccttattctttccatgatcttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctc |
210 |
Q |
| |
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||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
7289690 |
tgatctacattcttg-tttgaacacta-tccttattctttccatgatcttcaaccatcttcaaaatacactcaaaagtagagacttcacaaagaatcctc |
7289593 |
T |
|
| Q |
211 |
aatacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacccaaatattcagt---tggtatgatgaacc |
307 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
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| T |
7289592 |
aaaacaccagcttgttgaaacccaaattcttcttcagcttctctcaaaagaatctgaaaagcttgatgacacaaatattcagttggtggtatgatgaacc |
7289493 |
T |
|
| Q |
308 |
tcttaagctcttctccaacacaaacagctaaatacccttttggaacagaaccattgttgtttgatgatgttgttcctccttca |
390 |
Q |
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||||||| |||||||||| |||||||||||||||||||||| | ||| |||||||||| |||||||||||| ||||||||||| |
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| T |
7289492 |
tcttaagttcttctccaatacaaacagctaaatacccttttaggacataaccattgttctttgatgatgttattcctccttca |
7289410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 158 - 337
Target Start/End: Complemental strand, 50471318 - 50471139
Alignment:
| Q |
158 |
cttcaaccatcttcaaaatactctcaaaagtagagacttcacaaggaatcctcaatacaccagcttgttgaaacccaaattcttcttcagcttctctcaa |
257 |
Q |
| |
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|||||||||||||||| ||||||||||| || |||||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||| | |
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| T |
50471318 |
cttcaaccatcttcaagatactctcaaacactgaaacttcacaaggaattctcagaacaccagtttgttcaaacccaaattcttcttcagcttctctgag |
50471219 |
T |
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| Q |
258 |
aagaatctgaaaagcttgatgacccaaatattcagttggtatgatgaacctcttaagctcttctccaacacaaacagcta |
337 |
Q |
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| || ||||| ||||||||| ||||||| || |||||||| | ||||| ||||| ||| | ||||||||||| |||| |
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| T |
50471218 |
taatatatgaaaggcttgatgagccaaatactcggttggtataacaaacctgttaaggtctacaccaacacaaacggcta |
50471139 |
T |
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