View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15974_low_2 (Length: 757)
Name: NF15974_low_2
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15974_low_2 |
 | |
|
| [»] scaffold0024 (4 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 470; Significance: 0; HSPs: 17)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Complemental strand, 2952373 - 2951649
Alignment:
| Q |
8 |
tccaagaatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatat |
107 |
Q |
| |
|
|||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2952373 |
tccaagcatattatctagtatatccctccgaacaagtatatccacatcggtaccagtatttataatgtaatccaaaacaacaacataatcagcaatatat |
2952274 |
T |
|
| Q |
108 |
gtctcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctc |
207 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2952273 |
gactcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggttgaatcctgaacttttaattgaggaatttcaagaactcctt |
2952174 |
T |
|
| Q |
208 |
ccgaaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatcca |
304 |
Q |
| |
|
||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2952173 |
ccgaaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatcca |
2952074 |
T |
|
| Q |
305 |
ttctacaactctactcggccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcacccttatcaaaa |
404 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2952073 |
ttctacaactctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatcaaaa |
2951974 |
T |
|
| Q |
405 |
tccaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||| | |||| |
|
|
| T |
2951973 |
tccaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtgataggaacattag------------tcaatg |
2951886 |
T |
|
| Q |
505 |
aaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatcttgtattataccattggctaaccatggtttaaagggaaa |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | ||||||| ||||||||| | |
|
|
| T |
2951885 |
aaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtattataccagtacctaaccaaggtttaaagagctc |
2951786 |
T |
|
| Q |
605 |
cccaccatgataatatttccgaaaaatttgaattataaaacaagaatcgattaagactaacttaacaagttcatcttgagaaaatagtaaggtttcagaa |
704 |
Q |
| |
|
||| ||| | | || ||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| ||| |||||||||| |
|
|
| T |
2951785 |
cccttcataacaggatgtccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcagaa |
2951686 |
T |
|
| Q |
705 |
taacagcgtttgaaatgaggtaagatagaatctatgt |
741 |
Q |
| |
|
||||| | |||||||| || ||||||||| ||||||| |
|
|
| T |
2951685 |
taacaacttttgaaatcagataagatagattctatgt |
2951649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Original strand, 3003422 - 3004152
Alignment:
| Q |
8 |
tccaagaatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatat |
107 |
Q |
| |
|
|||||| ||||| |||||||| || ||||||||||||||||||||||| || |||||||||||||||||||||||||| | |||||| | ||||||| |
|
|
| T |
3003422 |
tccaagcatattttccagtatttcgctctgaacaagtatatccacatccttagcagtatttataaggtaatccaaaacagaacgataatcggtaatatat |
3003521 |
T |
|
| Q |
108 |
gtctcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctc |
207 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
3003522 |
gaatcatcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatccgcaactaataattgaggaatttcaagaactcctc |
3003621 |
T |
|
| Q |
208 |
ccgaaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatcca |
304 |
Q |
| |
|
||||||||||| | ||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
3003622 |
ccgaaaacctcaagtcaagtaaacacttactttcagtgttcactttaaatctaactccagcttctaacaactcagttgcactcggtggatgtttcatcca |
3003721 |
T |
|
| Q |
305 |
ttctacaactctactcggccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcacccttatcaaaa |
404 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
3003722 |
ttctctgactctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatcacccttatcaaaa |
3003821 |
T |
|
| Q |
405 |
tccaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatg |
504 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||| | |||| |
|
|
| T |
3003822 |
tccaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtggtaggaacattag------------tcaatg |
3003909 |
T |
|
| Q |
505 |
aaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatcttgtattataccattggctaaccatggtttaaagggaa- |
603 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | |||||||||| ||||||| ||||||||| ||| |
|
|
| T |
3003910 |
aaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtttcttataccattatctaaccaaggtttaaagagaat |
3004009 |
T |
|
| Q |
604 |
--acccac---catgataatatttccgaaaaatttgaattataaaacaagaatcgattaagactaacttaacaagttcatcttgagaaaatagtaaggtt |
698 |
Q |
| |
|
||| || ||| ||| ||| ||| ||||| ||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| ||| |||| |
|
|
| T |
3004010 |
gcaccgacgatcataatagtatctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtt |
3004109 |
T |
|
| Q |
699 |
tcagaataacagcgtttgaaatgaggtaagatagaatctatgt |
741 |
Q |
| |
|
|| |||||||| |||||||||| || ||||| ||| ||||||| |
|
|
| T |
3004110 |
tcggaataacaacgtttgaaatcagataagacagattctatgt |
3004152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Complemental strand, 2927600 - 2926867
Alignment:
| Q |
8 |
tccaagaatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatat |
107 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||| ||||||| |
|
|
| T |
2927600 |
tccaagcatattttccagtatttccctctgaacaagtatatccacatccttaccagtatttataaggtaatccaaaacagaacgataatcagtaatatat |
2927501 |
T |
|
| Q |
108 |
gtctcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctc |
207 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
2927500 |
gaatcatcagggtaatgacactgctccaaagcaaccatattccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaagaactcctc |
2927401 |
T |
|
| Q |
208 |
ccgaaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatcca |
304 |
Q |
| |
|
||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2927400 |
ccgaaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatcat |
2927301 |
T |
|
| Q |
305 |
ttcta--ca-------actctactcggccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcaccc |
395 |
Q |
| |
|
||| || |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
2927300 |
ccctaggcagacccggtctctactcggccgactttcaataggatgttgcaaatgaaatatccgaatcagatcagtgaagtgccttataataatatcaccc |
2927201 |
T |
|
| Q |
396 |
ttatcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtag |
495 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||||||| ||| |
|
|
| T |
2927200 |
ttatcaaaattcaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaatggatcatagtggtaggaacattag--------- |
2927110 |
T |
|
| Q |
496 |
aactgaatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatcttgtattataccattggctaaccatggttt |
595 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||| ||||| |
|
|
| T |
2927109 |
---tcaatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaaccataaatcgtgtcttataccattatctaaccaaggttt |
2927013 |
T |
|
| Q |
596 |
aaagggaaacccaccatgataatatttccgaaaaatttgaattataaaacaagaatcgattaagactaacttaacaagttcatcttgagaaaatagtaag |
695 |
Q |
| |
|
|||| || |||| | | ||| || ||| ||||| ||||||||||||| |||| |||||||| |||||||||||||||||| ||||||||| ||| | |
|
|
| T |
2927012 |
aaagagacacccttcgtaataggatgtccaaaaaagttgaattataaaagcggaattgattaagattaacttaacaagttcatcatgagaaaatggtagg |
2926913 |
T |
|
| Q |
696 |
gtttcagaataacagcgtttgaaatgaggtaagatagaatctatgt |
741 |
Q |
| |
|
||||| |||||||| |||||||||| || ||||||||| ||||||| |
|
|
| T |
2926912 |
gtttcggaataacaacgtttgaaatcagataagatagattctatgt |
2926867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 8 - 741
Target Start/End: Complemental strand, 2964949 - 2964195
Alignment:
| Q |
8 |
tccaagaatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatat |
107 |
Q |
| |
|
|||||| ||||| |||||||| | |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||| ||||||| |
|
|
| T |
2964949 |
tccaagcatattttccagtattttgttctgaacaagtatatccacatccttgccagtatttataaggtaatccaaaacagcaacatagtcagtaatatat |
2964850 |
T |
|
| Q |
108 |
gtctcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctc |
207 |
Q |
| |
|
| ||| | ||||||| ||||||||||||||||||||||||||||||| | | |||||||| ||| ||| | | |||||||||||||||||||||||||| |
|
|
| T |
2964849 |
gactcataagggtaacgacactgctccaaagcaaccatattccgaaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctc |
2964750 |
T |
|
| Q |
208 |
ccgaaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatcca |
304 |
Q |
| |
|
||||||||||| | ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
2964749 |
ccgaaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactaggtagatgtattatctg |
2964650 |
T |
|
| Q |
305 |
ttctacaa------ctctactcggccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcaccctta |
398 |
Q |
| |
|
|| | |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2964649 |
tttgttgatgttgtctctactcggccgattttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccctta |
2964550 |
T |
|
| Q |
399 |
tcaaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaac |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||||||||||||||||| || ||||||| |
|
|
| T |
2964549 |
tcaaaatccaattttgatttattgtaataatcaaaataatcagtagtgagtttaagaaaagaagggatgttagtgttaggaacactagcatttgtagaac |
2964450 |
T |
|
| Q |
499 |
tgaatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatcttgtattataccattggctaaccatggtttaaa |
598 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| | |||||||| |||||| ||| || | |
|
|
| T |
2964449 |
tcaatgaaagactgtaaattttttcaataacgaaatagggaagctgattttcaagtaacattaaatctgatcttataccaacatataaccaaggtataga |
2964350 |
T |
|
| Q |
599 |
gggaa---------acccaccatgataat---atttccgaaaaatttgaattataaaacaagaatcgattaagactaacttaacaagttcatcttgagaa |
686 |
Q |
| |
|
| ||| ||| | ||| ||||| || | | ||||| || ||||||||||| |||||||||||||| |||||| ||||||||||| |||||| |
|
|
| T |
2964349 |
gagaatattaatgcaccgaacatcataataggatctgcaaaaaagttcaattataaaaccagaatcgattaagattaacttgacaagttcatcatgagaa |
2964250 |
T |
|
| Q |
687 |
aatagtaaggtttcagaataacagcgtttgaaatgaggtaagatagaatctatgt |
741 |
Q |
| |
|
||| ||| ||||| |||||||||| |||||||| || |||||||| |||||||| |
|
|
| T |
2964249 |
aatggtagagtttcggaataacagcatttgaaatcagataagatagcatctatgt |
2964195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 741
Target Start/End: Complemental strand, 2935037 - 2934306
Alignment:
| Q |
10 |
caagaatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgt |
109 |
Q |
| |
|
|||| ||||||| |||||| || || ||||||||||||| |||| ||||||||||||||||||||||||| ||| |||||||||||| ||||||| |
|
|
| T |
2935037 |
caagcatattatgcagtatttcgttccgaacaagtatatcagcatccgtaccagtatttataaggtaatccatgacagcaacataatcagtgatatatga |
2934938 |
T |
|
| Q |
110 |
ctcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctccc |
209 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| ||||| || |||| ||| ||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
2934937 |
atcatcagggtaatgacactgctccaaagcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctccc |
2934838 |
T |
|
| Q |
210 |
gaaaacctccattcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccatt |
306 |
Q |
| |
|
||||||||| | ||||||||| | ||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||||| | | || || |
|
|
| T |
2934837 |
gaaaacctcaagtcaagtaaacacttacttttagtattcactttaaacctaactccagcttctaacaattcagttgcaccgggtagacttatcttctgtt |
2934738 |
T |
|
| Q |
307 |
ctacaa------ctctactcggccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcacccttatc |
400 |
Q |
| |
|
| | | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2934737 |
cgtcgaacatgtctctactcggccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacccttatc |
2934638 |
T |
|
| Q |
401 |
aaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaa---gggattgcagtgttaggaacactagctttcgtagaa |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |||||| ||| || ||| |
|
|
| T |
2934637 |
aaaatccaattttgatttattgtaataaccaaaataatgaatagtgagtctaagaaaagaatattgtatcatagtgttgggatcattag----------- |
2934549 |
T |
|
| Q |
498 |
ctgaatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatcttgtattataccattggctaaccatggtttaa |
597 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | |||||||| | ||||| | ||||||| |
|
|
| T |
2934548 |
-tcaatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacattaaatcgtctgttataccagtatctaacaaaggtttaa |
2934450 |
T |
|
| Q |
598 |
agggaaacccaccatgataatatttccgaaaaatttgaattataaaacaagaatcgattaagactaacttaacaagttcatcttgagaaaatagtaaggt |
697 |
Q |
| |
|
|| || ||| ||| ||| | | ||| ||||| ||||||||||||| ||||| ||||| | |||||||||||||||||| ||||||||| ||| ||| |
|
|
| T |
2934449 |
agagacgcccttcataatagtctctccaaaaaagttgaattataaaagcggaatctattaaaattaacttaacaagttcatcatgagaaaatggtagggt |
2934350 |
T |
|
| Q |
698 |
ttcagaataacagcgtttgaaatgaggtaagatagaatctatgt |
741 |
Q |
| |
|
|||||||||||| |||||||||| || ||||||||| ||||||| |
|
|
| T |
2934349 |
ttcagaataacaacgtttgaaatcagataagatagattctatgt |
2934306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 37 - 733
Target Start/End: Original strand, 2658652 - 2659366
Alignment:
| Q |
37 |
gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa |
136 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| ||| | |||||||||||| |||||||| |
|
|
| T |
2658652 |
gaacaagtatatccacatccttaccagtatttataaggtaatccaaaacagcaacataatcagtaatatatgactcataagggtaatgacattgctccaa |
2658751 |
T |
|
| Q |
137 |
agcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccga------aaacctccattcaagtaaa |
230 |
Q |
| |
|
|||||||||||| ||||| ||| |||| ||| ||| | ||| ||||||||||||||||||||||||||| || ||||||| | ||||||||| |
|
|
| T |
2658752 |
agcaaccatatttcgaaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctgattttgaaaacctcaagtcaagtaaa |
2658851 |
T |
|
| Q |
231 |
---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa-ctc-----tactcg |
321 |
Q |
| |
|
| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| | | | |||||| |
|
|
| T |
2658852 |
cacttacttttagtgctcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcatccgttcgtcggtcgcgttattactcg |
2658951 |
T |
|
| Q |
322 |
gccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcacccttatcaaaatccaattttgatttatt |
421 |
Q |
| |
|
| ||| | ||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
2658952 |
gtcgaatttcaataggaagttgcaaatgaaatatcctaatcagatcagtgaagtgcattatactaatatcaccattatcaaaaaacaagtttgatttatt |
2659051 |
T |
|
| Q |
422 |
gtaataaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttt |
521 |
Q |
| |
|
| || || |||||| | ||||||||||| ||||||| |||||| | ||| |||||||||||||| || |||||||| ||||||| ||||||||| | |
|
|
| T |
2659052 |
ggaagaataaaaatatttaatagtgagttcaagaaaaccagggatcgtagtcttaggaacactagcatttgtagaactcgatgaaagtttgtaaatttct |
2659151 |
T |
|
| Q |
522 |
tcaataacgaaaaagggaagctgattttcaagtaacaataaatcttgtattataccattggctaaccatggtttaaagggaaacccaccatgataa---t |
618 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |||||||| |||||||| ||| |||| | |
|
|
| T |
2659152 |
tcaataacgaaaaagggaagctgattttcaagtaacaataaatctaatgctataccatcatctaaccaaggtttaaatagaaacccatcatcataatagt |
2659251 |
T |
|
| Q |
619 |
atttccgaaaaatttgaattataaaacaagaatcgattaagactaacttaacaagttcatcttgagaaaatagtaaggtttcagaataacagcgtttgaa |
718 |
Q |
| |
|
|| ||| ||||| ||||||||||||||| ||||||||||||| ||||||||||||||||| | ||||||| ||| |||||| |||||||| | |||||| |
|
|
| T |
2659252 |
atgtccaaaaaagttgaattataaaacaggaatcgattaagattaacttaacaagttcattatcagaaaatggtagggtttcggaataacaacttttgaa |
2659351 |
T |
|
| Q |
719 |
atgaggtaagataga |
733 |
Q |
| |
|
| ||| |||| |||| |
|
|
| T |
2659352 |
acgagataagttaga |
2659366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 566
Target Start/End: Complemental strand, 2974432 - 2973895
Alignment:
| Q |
23 |
cagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaa |
122 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||| || | ||||||| |||||||| || | ||||||| |
|
|
| T |
2974432 |
cagtatattgctccgaacaagtatatccacatccgtactagtatttataaggtaatccaaaataaaatgataatcaataatatatgactgataagggtaa |
2974333 |
T |
|
| Q |
123 |
tgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctccatt |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
2974332 |
tgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagt |
2974233 |
T |
|
| Q |
223 |
caagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------c |
313 |
Q |
| |
|
|| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| | | | |
|
|
| T |
2974232 |
catgtaaacattcacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatttgttcatcgatctgctc |
2974133 |
T |
|
| Q |
314 |
tctactcggccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcacccttatcaaaatccaatttt |
413 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||| ||||||||| |||||||| |
|
|
| T |
2974132 |
tctactcggcctactttcaataggatgtttcaaatgaaatatcctaatcagatcattgaagtgcattatactaatatcattgttatcaaaacccaatttt |
2974033 |
T |
|
| Q |
414 |
gatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgt |
513 |
Q |
| |
|
| ||||||| || | ||| ||| |||||||||||||||||||||| |||| |||||||||||| | | ||||||| ||||| |
|
|
| T |
2974032 |
ggtttattgaaacattgaaagtaagcaatagtgagtttaagaaaagaatggatcatagtgttaggaac---------------agtcaatgaaatactgt |
2973948 |
T |
|
| Q |
514 |
aaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatct |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2973947 |
aaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatct |
2973895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 38 - 394
Target Start/End: Complemental strand, 2937870 - 2937505
Alignment:
| Q |
38 |
aacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaaa |
137 |
Q |
| |
|
|||||||||| || |||| |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||| |
|
|
| T |
2937870 |
aacaagtatacccgcatccttaccggtatttataaggtaatccaaaacaacaacataatcagcaatatatgactcatgagggtaatgacactgctccaaa |
2937771 |
T |
|
| Q |
138 |
gcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctccattcaagta---aatcac |
234 |
Q |
| |
|
||||||||||||| ||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||| ||||| ||| | ||||||| ||| || |
|
|
| T |
2937770 |
gcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctgaaaatctcaagtcaagtaaacaattac |
2937671 |
T |
|
| Q |
235 |
tttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggccgact |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| | | |||||||||||||||| |
|
|
| T |
2937670 |
tttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatctgttcgtcgatcgcttctctactcggccgact |
2937571 |
T |
|
| Q |
329 |
atcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcacc |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
2937570 |
ttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgacttatactaatatcacc |
2937505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 34 - 463
Target Start/End: Complemental strand, 2983280 - 2982839
Alignment:
| Q |
34 |
tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctc |
133 |
Q |
| |
|
|||||| ||||| ||||||||| ||||| |||||||||||||||||||||||| |||||||||| |||||||| ||| | |||||||||||| ||||| |
|
|
| T |
2983280 |
tctgaataagtacatccacatccttaccattatttataaggtaatccaaaacaagaacataatcaagaatatatgactcatgagggtaatgacaatgctc |
2983181 |
T |
|
| Q |
134 |
caaagcaaccatattccgaaataaagtttcggtcg---aatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaa |
230 |
Q |
| |
|
|||||||| |||||||||||| ||| ||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||| | ||| |||| |
|
|
| T |
2983180 |
caaagcaatcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctcccgaaaacctcaagtcatataaa |
2983081 |
T |
|
| Q |
231 |
---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctac------aactctactcg |
321 |
Q |
| |
|
| ||||| ||| ||||||| |||||||||||||||||||| ||||| ||||||| || ||| |||| |||||| || | | |||||||||| |
|
|
| T |
2983080 |
cacttacttttagttttcacttgaaacctaactccagcttctaccaactgagttgcagtctgtatatgtattatccgtttttcgatcttgactctactcg |
2982981 |
T |
|
| Q |
322 |
gccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcacccttatcaaaatccaattttgatttatt |
421 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
2982980 |
gccgactttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccattatcaaaagacaattttgatttatt |
2982881 |
T |
|
| Q |
422 |
gtaataaccaaaataatgaatagtgagtttaagaaaagaagg |
463 |
Q |
| |
|
| | ||| ||||| |||||||||| |||||||||||| |
|
|
| T |
2982880 |
caattttttaaagtaatggatagtgagttcaagaaaagaagg |
2982839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 314 - 738
Target Start/End: Original strand, 2997341 - 2997765
Alignment:
| Q |
314 |
tctactcggccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcacccttatcaaaatccaatttt |
413 |
Q |
| |
|
||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| ||| |
|
|
| T |
2997341 |
tctacccggccgattttcaaagggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcaccatcatcaaaaaacaagttt |
2997440 |
T |
|
| Q |
414 |
gatttattgtaataaccaaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgt |
513 |
Q |
| |
|
||||||||| || || ||| ||| ||||||||||| ||||||| ||||||| |||||||||| |||||| || |||||||||||||||||||||| |
|
|
| T |
2997441 |
gatttattgaaagaaaagaaaaaattaatagtgagttcaagaaaacaagggatcatagtgttaggattactagcatttgtagaactgaatgaaagactgt |
2997540 |
T |
|
| Q |
514 |
aaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatcttgtattataccattggctaaccatggtttaaagggaaacccaccatg |
613 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| ||||| | | ||||||||| | ||||| ||| |||| ||||||||||| |
|
|
| T |
2997541 |
aaattttttcaataacgaaaaagggaagttgattttcaagtaacattaaatttgttgttataccatcatcgaaccaaagttcaaagacaaacccaccata |
2997640 |
T |
|
| Q |
614 |
ataatatttccgaaaaatttgaattataaaacaagaatcgattaagactaacttaacaagttcatcttgagaaaatagtaaggtttcagaataacagcgt |
713 |
Q |
| |
|
| ||| || |||| || ||||||||||| ||||||||||||| |||||||||||||||||| ||||||||| ||| |||||| |||||||| ||| |
|
|
| T |
2997641 |
gtggtatctcaagaaaagttcaattataaaaccggaatcgattaagattaacttaacaagttcatcatgagaaaatggtagggtttcggaataacaacgt |
2997740 |
T |
|
| Q |
714 |
ttgaaatgaggtaagatagaatcta |
738 |
Q |
| |
|
||||||| || |||||||||||||| |
|
|
| T |
2997741 |
ttgaaattagataagatagaatcta |
2997765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 130; E-Value: 6e-67
Query Start/End: Original strand, 36 - 296
Target Start/End: Original strand, 2997039 - 2997302
Alignment:
| Q |
36 |
tgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctcca |
135 |
Q |
| |
|
|||||||||||||| ||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||||| || | || ||||||| ||||||||| |
|
|
| T |
2997039 |
tgaacaagtatatcaacatccttaccagtgtttataaggtaatccaaaacagaaacataatcagtaatatataacttgttagtgtaatgaaactgctcca |
2997138 |
T |
|
| Q |
136 |
aagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaa---tc |
232 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||| ||||| ||| |||||||||||||||| |||||||||||||| | ||||||||| | |
|
|
| T |
2997139 |
aagcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaagaacttctcccgaaaacctcaagtcaagtaaacactt |
2997238 |
T |
|
| Q |
233 |
actttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgt |
296 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2997239 |
gcttttagtgttcactttaaacttaactccagcttctaacaactcagttgcacttggtagatgt |
2997302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 21 - 292
Target Start/End: Complemental strand, 2929736 - 2929462
Alignment:
| Q |
21 |
tccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggt |
120 |
Q |
| |
|
|||||||| || |||||| ||||||||| | || |||||||||||||||| |||||| || | |||||||||| |||||||| ||| | ||||| |
|
|
| T |
2929736 |
tccagtatttctttctgaataagtatatcggcgtccttaccagtatttataagaaaatccataatagtaacataatcaagaatatatgactcatgagggt |
2929637 |
T |
|
| Q |
121 |
aatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctcca |
220 |
Q |
| |
|
||||| ||||||||||||||| |||||||| |||||||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
2929636 |
aatgaaactgctccaaagcaatcatattccaaaataaagtttcggtcccatctgcaactgttaattgaggaatttcaagaactcctcctgaaaaccttaa |
2929537 |
T |
|
| Q |
221 |
ttcaagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtag |
292 |
Q |
| |
|
||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2929536 |
gtcaagtaaacacttacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactccgtag |
2929462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 502 - 738
Target Start/End: Complemental strand, 2982818 - 2982582
Alignment:
| Q |
502 |
atgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatcttgtattataccattggctaaccatggtttaaaggg |
601 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | || |||| | | |||||| |||| |||| | |
|
|
| T |
2982818 |
atgaacgactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacagtacatcatataatataagactttttaaccaaggttgaaagag |
2982719 |
T |
|
| Q |
602 |
aaacccaccatgataatatttccgaaaaatttgaattataaaacaagaatcgattaagactaacttaacaagttcatcttgagaaaatagtaaggtttca |
701 |
Q |
| |
|
| |||||||| ||| | | ||| ||||| ||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| ||| || |||| |
|
|
| T |
2982718 |
agccccaccataatattttctccaaaaaagttgaattataaaagcggaatcgattaagattaacttaacaagttcattatgagaaaatggtaggggttca |
2982619 |
T |
|
| Q |
702 |
gaataacagcgtttgaaatgaggtaagatagaatcta |
738 |
Q |
| |
|
||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
2982618 |
gaataacagtgtttgaaatcagataagatagaatcta |
2982582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 144 - 284
Target Start/End: Complemental strand, 2978550 - 2978408
Alignment:
| Q |
144 |
atattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaa---tcactttcag |
240 |
Q |
| |
|
|||| |||||| ||| |||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||| || |
|
|
| T |
2978550 |
atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag |
2978451 |
T |
|
| Q |
241 |
tgttcactttaaacctaactccagcttctaacaactcagttgca |
284 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
2978450 |
tgttcactttaaacctaa-tccagcttctaacaattcagttgca |
2978408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 2979328 - 2979192
Alignment:
| Q |
8 |
tccaagaatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatat |
107 |
Q |
| |
|
|||||| | ||| |||||||| | ||| ||||||||||||||||||| ||||| ||||||||||||||||| || |||||| ||||||| ||||||| |
|
|
| T |
2979328 |
tccaagcaaattttccagtattttgctccgaacaagtatatccacatccgtaccggtatttataaggtaatcgaagacaaca---taatcagtaatatat |
2979232 |
T |
|
| Q |
108 |
gtctcctcagggtaatgacactgctccaaagcaaccatat |
147 |
Q |
| |
|
| ||| | |||||||| ||||||||||||||||||||||| |
|
|
| T |
2979231 |
gactcatgagggtaataacactgctccaaagcaaccatat |
2979192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 635 - 733
Target Start/End: Complemental strand, 2973826 - 2973728
Alignment:
| Q |
635 |
aattataaaacaagaatcgattaagactaacttaacaagttcatcttgagaaaatagtaaggtttcagaataacagcgtttgaaatgaggtaagataga |
733 |
Q |
| |
|
||||||||||| ||||| ||||| | |||||||||||||||| ||||||||| || ||||| |||||||||| |||||||| || ||||||||| |
|
|
| T |
2973826 |
aattataaaaccggaatccattaaaattaacttaacaagttcaatatgagaaaatgatagggttttggaataacagcctttgaaatcagataagataga |
2973728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 2985742 - 2985688
Alignment:
| Q |
34 |
tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaac |
88 |
Q |
| |
|
||||||||||||||||| |||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
2985742 |
tctgaacaagtatatccgcatccttactagtatttataaggtaatccaaagcaac |
2985688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 34 - 566
Target Start/End: Complemental strand, 49613850 - 49613315
Alignment:
| Q |
34 |
tctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctc |
133 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| |||||| ||||||||||| |||||||||| | ||| || | ||| |||||| ||||| ||||| |
|
|
| T |
49613850 |
tctgaacaagtatatccacatccttgccagtattaataaggaaatccaaaacagcaacataatccgtaatgtaggactcactagggtagtgacattgctc |
49613751 |
T |
|
| Q |
134 |
caaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaa--- |
230 |
Q |
| |
|
||||||||||||||||||||| ||| |||| ||| |||||| ||| |||||||||||||||||||| | ||| ||||||||| | ||||||||| |
|
|
| T |
49613750 |
caaagcaaccatattccgaaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctgaaaacctcaaatcaagtaaacac |
49613651 |
T |
|
| Q |
231 |
tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaactctactcggccgactat |
330 |
Q |
| |
|
||||||| |||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| || ||| ||| |||| |||||| || | |
|
|
| T |
49613650 |
tcacttttagtgttcactttaaacctcaccccagcttctaacaactcagttgcactctgtagatgtttcattggttcatcaattctaagcggccgtcttt |
49613551 |
T |
|
| Q |
331 |
caataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcacccttatcaaaatccaattttgatttattgtaataacc |
430 |
Q |
| |
|
| ||||||||||| || || |||||||||||||||||||||||||| ||||||| ||| || ||||||||| |||| ||||||| ||||||||| | |
|
|
| T |
49613550 |
gcaaaggatgttgcaggtggaaaatcctaatcagatcagtgaagtgccttatactaaaatcgccattatcaaaacccaagtttgattgattgtaatatgc |
49613451 |
T |
|
| Q |
431 |
aaaataatgaatagtgagtttaagaaaagaagggattgcagtgttaggaacactagctttcgtagaactgaatgaaagactgtaaattttttcaataacg |
530 |
Q |
| |
|
|||||||| || | | |||| |||||||||||||||| ||| || ||||||||||| || |||||| | ||||||||| ||||||||| || |||||| |
|
|
| T |
49613450 |
aaaataatcaaaactaagttcaagaaaagaagggattttagtcttgggaacactagcgttagtagaagtaaatgaaagattgtaaatttcttgaataaca |
49613351 |
T |
|
| Q |
531 |
aaaaagggaagctgattttcaagtaacaataaatct |
566 |
Q |
| |
|
||||| || | ||||||||||||||||| |||||| |
|
|
| T |
49613350 |
aaaaatggcaattgattttcaagtaacaacaaatct |
49613315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 10 - 438
Target Start/End: Complemental strand, 49618850 - 49618421
Alignment:
| Q |
10 |
caagaatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgt |
109 |
Q |
| |
|
|||| ||||||||| |||| | |||||||||||||||||| |||| |||| ||||||||||||||||||||||| || ||||||| |||||| | |
|
|
| T |
49618850 |
caagcatattatcctgtattcctctctgaacaagtatatccgcatccctaccgatatttataaggtaatccaaaacagaaatataatcataaatatagga |
49618751 |
T |
|
| Q |
110 |
ctcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctccc |
209 |
Q |
| |
|
|| | |||||||||| |||||||||||||| |||||||||| ||||| |||| ||| ||||||||||||||||||||||| ||| |
|
|
| T |
49618750 |
atcatgagggtaatga-----------agcaaccatattcc-aaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccg |
49618663 |
T |
|
| Q |
210 |
gaaaacctccattcaagtaaatc---actttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccatt |
306 |
Q |
| |
|
||||||||| | ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||| | || ||||||| | | || ||| |
|
|
| T |
49618662 |
gaaaacctcaagtcaagtaaacatgtagttttagtgttcactttaaacctaactccagcttctaacaactcagtggtgctgggtagatatatcatagatt |
49618563 |
T |
|
| Q |
307 |
c-------taca-----actctactcggccgactatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcatactaatatcacc |
394 |
Q |
| |
|
| || | ||||| |||| | || ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
49618562 |
tgtcgaagtccatgatgattctacccggctgcctttcaataggatgttccaaatgaaatatcctaatcagatcagtgaagtgccttatactaatatcacc |
49618463 |
T |
|
| Q |
395 |
cttatcaaaatccaattttgatttattgtaataaccaaaataat |
438 |
Q |
| |
|
| ||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
49618462 |
gtcatcaaaatccaattttgatttat--taataatcaaaataat |
49618421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 501 - 566
Target Start/End: Complemental strand, 49618361 - 49618295
Alignment:
| Q |
501 |
aatgaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagt-aacaataaatct |
566 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||| |
|
|
| T |
49618361 |
aatgaaagaatgtaaatattttcaataacgaaatagggaagctgattttgaagtaaacaataaatct |
49618295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 648 - 741
Target Start/End: Complemental strand, 49618195 - 49618102
Alignment:
| Q |
648 |
gaatcgattaagactaacttaacaagttcatcttgagaaaatagtaaggtttcagaataacagcgtttgaaatgaggtaagatagaatctatgt |
741 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||| |||| |||| ||| ||||| |||||| || | |||||||||| |||||| |||||||||| |
|
|
| T |
49618195 |
gaatcaattaagattaacttaacaaattcatcatgagtaaattgtagggttttggaataagagtgattgaaatgagataagatggaatctatgt |
49618102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 179; Significance: 3e-96; HSPs: 4)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 37 - 461
Target Start/End: Original strand, 34909 - 35342
Alignment:
| Q |
37 |
gaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaatgacactgctccaa |
136 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||| |||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
34909 |
gaacaagtatatccgcatccttaccagtatttataaggaaatccaaaacaacaacataatcagtaatatatgactcataagggtaatgacactgctccaa |
35008 |
T |
|
| Q |
137 |
agcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctccattcaagtaaa---tca |
233 |
Q |
| |
|
|||||||||||||||||| ||| |||||||| ||||| ||| |||| ||||||||||||| |||||| ||||||||| | | ||||||||| ||| |
|
|
| T |
35009 |
agcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccgaaaaccccaagtcaagtaaacactca |
35108 |
T |
|
| Q |
234 |
ctttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa------ctctactcggccgac |
327 |
Q |
| |
|
|||| || ||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||| ||| | | ||||||| ||| ||| |
|
|
| T |
35109 |
cttttaggcttcacttgaaacctaactccagcttctaacaactgagttgcactcggtagatgtattatctgttcgtcgatcttgtctctacttggctgac |
35208 |
T |
|
| Q |
328 |
tatcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgcctcat--act-aatatcacccttatcaaaatccaattttgatttattgta |
424 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||| | ||||||||| |||||||||||| |||| | |
|
|
| T |
35209 |
tttcaataggatgttgcaaatgaaatatcctaatcagatcagtgaagtgccttatgcactgactatta---ttatcaaaaaccaattttgattgattgaa |
35305 |
T |
|
| Q |
425 |
ataaccaaaataatgaatagtgagtttaagaaaagaa |
461 |
Q |
| |
|
||| |||||||| ||||||||||| |||||||||| |
|
|
| T |
35306 |
atattgaaaataattaatagtgagttcaagaaaagaa |
35342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 504 - 741
Target Start/End: Original strand, 35361 - 35598
Alignment:
| Q |
504 |
gaaagactgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatcttgtattataccattggctaaccatggtttaaagggaa |
603 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||| |||| | |||| |
|
|
| T |
35361 |
gaaagaccgtaaattttttcaataacgaaaaagggaagctgattttcaagtaacaataaatctgatcttataccagcatctaaccaaggttcta--ggaa |
35458 |
T |
|
| Q |
604 |
acccaccatgataatatttccgaaaaatttgaattataaaacaagaatcgattaagactaacttaacaag---ttcatcttgagaaaatagtaaggtttc |
700 |
Q |
| |
|
| | | | | ||||||||| ||||| |||||||||||||| ||||||||||||| |||||||||||| |||||| |||| |||| || |||||| |
|
|
| T |
35459 |
atctttc-ttaaaatatttccaaaaaagttgaattataaaaccggaatcgattaagattaacttaacaagttcttcatcctgaggaaatgatagggtttc |
35557 |
T |
|
| Q |
701 |
agaataacagcgtttgaaatgaggtaagatagaatctatgt |
741 |
Q |
| |
|
|||||||| | |||||||| || ||||||||||| ||||| |
|
|
| T |
35558 |
cgaataacaacatttgaaatcagataagatagaatatatgt |
35598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 8 - 230
Target Start/End: Original strand, 44569 - 44791
Alignment:
| Q |
8 |
tccaagaatattatccagtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatat |
107 |
Q |
| |
|
|||||| | ||| |||||||| | ||| ||||| ||||||| |||| ||||||||||||||||||||||||||| | ||||||||| | ||||||| |
|
|
| T |
44569 |
tccaagcaaattttccagtattttgctccgaacatgtatatctgcatccttaccagtatttataaggtaatccaaaatagcaacataattaataatatat |
44668 |
T |
|
| Q |
108 |
gtctcctcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttc-ggtcgaatcctgaacaaataattgaggaatttcaagaactcct |
206 |
Q |
| |
|
| || | |||||||||| ||| ||||| |||||||||||| | ||| ||| |||| ||| | ||| | | | ||||||||||||||||||||||| | |
|
|
| T |
44669 |
gattcattagggtaatgatactactccatagcaaccatatttcaaaacaaaatttcaggttg-atcatcagctcttaattgaggaatttcaagaactctt |
44767 |
T |
|
| Q |
207 |
cccgaaaacctccattcaagtaaa |
230 |
Q |
| |
|
| ||||||||| | ||||||||| |
|
|
| T |
44768 |
tctgaaaacctcaaatcaagtaaa |
44791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 239 - 284
Target Start/End: Original strand, 45123 - 45168
Alignment:
| Q |
239 |
agtgttcactttaaacctaactccagcttctaacaactcagttgca |
284 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
45123 |
agtggtcacttgaaacctaactccagcttctaacaactcatttgca |
45168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 141; Significance: 2e-73; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 141; E-Value: 2e-73
Query Start/End: Original strand, 24 - 283
Target Start/End: Complemental strand, 3339449 - 3339187
Alignment:
| Q |
24 |
agtatatccctctgaacaagtatatccacatcggtaccagtatttataaggtaatccaaaacaacaacataatcagcaatatatgtctcctcagggtaat |
123 |
Q |
| |
|
||||| || |||| |||||||||||||||||| ||| ||||||||||||| ||||||||| | ||||||||||| |||||||| ||| |||||||||| |
|
|
| T |
3339449 |
agtatttcgctcttaacaagtatatccacatccatactagtatttataaggaaatccaaaaaagcaacataatcaataatatatgactcatcagggtaat |
3339350 |
T |
|
| Q |
124 |
gacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatcctgaacaaataattgaggaatttcaagaactcctcccgaaaacctccattc |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||| ||| | ||| ||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
3339349 |
gacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccgaaaacctcaagcc |
3339250 |
T |
|
| Q |
224 |
aagtaaa---tcactttcagtgttcactttaaacctaactccagcttctaacaactcagttgc |
283 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3339249 |
aagtaaacactcacttttagtgttcactttaaacctaactcctgcttctaacaactcagttgc |
3339187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 626 - 738
Target Start/End: Complemental strand, 3339003 - 3338891
Alignment:
| Q |
626 |
aaaaatttgaattataaaacaagaatcgattaagactaacttaacaagttcatcttgagaaaatagtaaggtttcagaataacagcgtttgaaatgaggt |
725 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||||||||||||| ||| | ||||||| || | ||| |||||||| |||||||||| |||| |
|
|
| T |
3339003 |
aaaaagttgaattataaaaccggaatcgattaagattaacttaacaagtttatcatcagaaaatgttaggaattccgaataacaacgtttgaaatcaggt |
3338904 |
T |
|
| Q |
726 |
aagatagaatcta |
738 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
3338903 |
aagatagactcta |
3338891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 526 - 566
Target Start/End: Complemental strand, 3339091 - 3339051
Alignment:
| Q |
526 |
taacgaaaaagggaagctgattttcaagtaacaataaatct |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3339091 |
taacgaaaaagggaagctgattttcaagtaacaataaatct |
3339051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 366
Target Start/End: Complemental strand, 3339128 - 3339092
Alignment:
| Q |
330 |
tcaataggatgttgcaaatgaaatatcctaatcagat |
366 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3339128 |
tcaataggatgttgcaaatgaaatatcctaatcagat |
3339092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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