View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15974_low_3 (Length: 731)
Name: NF15974_low_3
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15974_low_3 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 23 - 721
Target Start/End: Original strand, 5885144 - 5885858
Alignment:
| Q |
23 |
tctcatagtttaatttatttggtcttgctatggtgccgccatggctgatattcgataacactgcattaaaatcaattgttcaaatgattggtataaatta |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5885144 |
tctcatagtttaatttatttggtcttgctatggtgccgccatggctgatattcgataacactgcattaaaatcaattgttcaaatgattggtataaatta |
5885243 |
T |
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| Q |
123 |
acttattaaaaatcaaacataaaagatagttctgcactaggagaagttatcacaataaataaccttatgccattggtaatggacgttagccctctttgct |
222 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5885244 |
acttattaaaaataaaacataaaagatagttctgcactgggagaagttatcacaataaataaccttatgccattggtaatggacgttagccctctttgct |
5885343 |
T |
|
| Q |
223 |
cgggcctctcatgcaacacaatgaattgttgtcgatcccaagcatctccaccgcatgctccatcgatcttcattg-----------------attttaat |
305 |
Q |
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||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
5885344 |
cgggcctctcatgcaacacaatgaactgttgttgatcccaagcatctccaccgcatgctccatcgatcttcattgcttccggctcttgattgattttaat |
5885443 |
T |
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| Q |
306 |
tttgggaggaaaagaaaagcgcgagaaaatttgaagtgatacacgaagaatattgtatacgcacacacaatgatactatgtaaggatccatgtttgctca |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
5885444 |
tttgggaggaaaagaaaagcgcgagaaaatttgaagtggtacacgaagaaaattgtatacgcactcacaatgatactatgtaaggatccatgtttgctca |
5885543 |
T |
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| Q |
406 |
tagtagatatttgattgatcctatagtagtatccatgattaaaaacaaaaagatttaaacaagaacctaattcatatataactaattatttgatcatttt |
505 |
Q |
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| T |
5885544 |
tagtagatatttgattgatcctatagtagtatccatgagtaaaaacaaaaagatttaaacaagaacctgattcatatataactaattatt-gatcatttt |
5885642 |
T |
|
| Q |
506 |
aatcgtttctatatctttgttcggcatctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaac |
605 |
Q |
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| T |
5885643 |
aatcgtttctatatctttattcggcatcgttcaccattttgaagacagtatcagcccgctcagcaatgtttggtactttataattctaagcgacgtaaac |
5885742 |
T |
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| Q |
606 |
tccagcaacagttcctgctttaaaagaaaagcaattattgattataccaattggaatttctctttaggtgttcacttgcattttgtacatgttgttttta |
705 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5885743 |
tccggcaacagttcctgctttaaaagaaaagcaattattgattacaccaattggaatttctctttaggtgttctcttgcattttgtacatgttgttttta |
5885842 |
T |
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| Q |
706 |
ctgaatttatcctttg |
721 |
Q |
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|||| ||||||||||| |
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| T |
5885843 |
ctgagtttatcctttg |
5885858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 6e-33; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 530 - 658
Target Start/End: Complemental strand, 45373382 - 45373254
Alignment:
| Q |
530 |
catctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaacagttcctgctttaaa |
629 |
Q |
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||||||| |||||||||||||| |||||||||| ||||||||||||||||| ||||||||| | ||| |||||||| || ||||||||||| ||| ||| |
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| T |
45373382 |
catctttgaccattttgaagacggtatcagccctctcagcaatgttaggtagtttataattttgagcaacgtaaacaccggcaacagttccagctacaaa |
45373283 |
T |
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| Q |
630 |
agaaaagcaattattgattataccaattg |
658 |
Q |
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| T |
45373282 |
agagaagcaattcttgattataccaattg |
45373254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 547 - 653
Target Start/End: Complemental strand, 45370079 - 45369973
Alignment:
| Q |
547 |
aagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaacagttcctgctttaaaagaaaagcaattattga |
646 |
Q |
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|||| ||||||||| ||| |||||||| |||||||||||| |||| |||||||||||| || | ||||||||||||| ||||||| |||||| |||| |
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| T |
45370079 |
aagaaagtatcagcgagcttagcaatgtcaggtactttatagttctgagcgacgtaaacaccggtaacagttcctgctataaaagagaagcaacccttga |
45369980 |
T |
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| Q |
647 |
ttatacc |
653 |
Q |
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| T |
45369979 |
ttatacc |
45369973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 613
Target Start/End: Complemental strand, 96341 - 96258
Alignment:
| Q |
530 |
catctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaa |
613 |
Q |
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| T |
96341 |
catctttgaccattttcaagacggtatcagccctctcagcaatgttaggcagtttataattttgagcaacgtaaactccggcaa |
96258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 530 - 613
Target Start/End: Complemental strand, 9093378 - 9093295
Alignment:
| Q |
530 |
catctttcaccattttgaagacagtatcagcccgctcagcaatgttaggtactttataattctaagcgacgtaaactccagcaa |
613 |
Q |
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||||||| |||||||| ||||| |||||||||| |||||||||||||| | ||||||||| | ||||||||||||||| |||| |
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| T |
9093378 |
catctttgaccattttcaagacggtatcagccctctcagcaatgttagacagtttataattttgagcgacgtaaactccggcaa |
9093295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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