View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15974_low_5 (Length: 677)

Name: NF15974_low_5
Description: NF15974
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15974_low_5
NF15974_low_5
[»] chr4 (3 HSPs)
chr4 (242-659)||(21832797-21833214)
chr4 (141-236)||(21832402-21832497)
chr4 (22-84)||(21832285-21832347)
[»] chr7 (1 HSPs)
chr7 (468-636)||(10615855-10616023)
[»] chr6 (2 HSPs)
chr6 (471-616)||(6417254-6417399)
chr6 (397-442)||(6433175-6433220)
[»] chr8 (1 HSPs)
chr8 (433-518)||(45055773-45055858)
[»] chr5 (1 HSPs)
chr5 (459-600)||(28532997-28533138)
[»] chr1 (1 HSPs)
chr1 (578-618)||(30827961-30828001)


Alignment Details
Target: chr4 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 242 - 659
Target Start/End: Original strand, 21832797 - 21833214
Alignment:
Q  242 caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcaccaacgttaccgtctttttgtgtt 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  21832797 caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcactaacgttaccgtctttttgtgtt 21832896  T
Q  342 cacagtttctacagttttcacgacttcgcaaaaccatggttacaacaacacattcatattcatacttacctgatgactgttggaaatgcatcttcaaatt 441  Q
    ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  21832897 cacggtttctgcagttttcacgacttcgcaaaaccatggttacaacaacacattcaaattcatacttacctgatgactgttggaaatgcatcttcaaatt 21832996  T
Q  442 catcatcgacgacgacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactg 541  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21832997 catcatcgacgaggacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactg 21833096  T
Q  542 actgtcctcaatccaacacgccctctcatccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacctcgaca 641  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||    
T  21833097 actgtcctcaatccaacacgccctctcatccgtcccctcttcaaaagattcaccaaccttacctcccttaacctctctcgcttccacggtgacctcaaca 21833196  T
Q  642 accttctccgtcaaatct 659  Q
    ||||||||||||||||||    
T  21833197 accttctccgtcaaatct 21833214  T

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Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 141 - 236
Target Start/End: Original strand, 21832402 - 21832497
Alignment:
Q  141 cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatccgttacc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21832402 cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatctgttacc 21832497  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 21832285 - 21832347
Alignment:
Q  22 agtgtggagaaataagtgttgccgataatccatttcctaattgaatgaagttgaattttatgt 84  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  21832285 agtgtggagaaataagtgttgccgataatccatttcccaattgaatgaagttgaattttatgt 21832347  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 468 - 636
Target Start/End: Complemental strand, 10616023 - 10615855
Alignment:
Q  468 gtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaacacgccctct 567  Q
    ||||||||||| || ||||||||  ||||||||| ||| |||||||||||| | | |   | || || ||||| ||| || ||||||||||||||||| |    
T  10616023 gtcgctacttgaattctctctcccttgtctccaagcaactcctctccatcaccaaccggatccggttctcactcactatcttcaatccaacacgcccttt 10615924  T
Q  568 catccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctctctcgcttccacggtgacct 636  Q
    | |  | | |||||| ||||| ||||| || ||||  ||||| |||||| | |||||||||||||||||    
T  10615923 cctttgcctcctctttaaaagattcacaaaccttaattccctcaacctcacacgcttccacggtgacct 10615855  T

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Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 471 - 616
Target Start/End: Complemental strand, 6417399 - 6417254
Alignment:
Q  471 gctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaacacgccctctcat 570  Q
    |||||||| ||  |||||||  ||||||||| ||| |||||||||||| | | |   |||||||  |||||||| |||||||||||||||||||| || |    
T  6417399 gctacttgaattttctctcccttgtctccaagcaactcctctccatcaccaaccgaattcgattcacactgactatcctcaatccaacacgccctttcct 6417300  T
Q  571 ccgtcccctcttcaaaaggttcaccaatcttacctcccttaacctc 616  Q
      ||| |||||| ||||| ||||| || ||||  ||||| ||||||    
T  6417299 ttgtcgcctctttaaaagattcacaaaccttaattccctcaacctc 6417254  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 6433220 - 6433175
Alignment:
Q  397 atattcatacttacctgatgactgttggaaatgcatcttcaaattc 442  Q
    ||||||| | |||||||||||||||||| |||||||||||| ||||    
T  6433220 atattcaaatttacctgatgactgttgggaatgcatcttcagattc 6433175  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 433 - 518
Target Start/End: Original strand, 45055773 - 45055858
Alignment:
Q  433 cttcaaattcatcatcgacgacgacgacaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatca 518  Q
    |||||||||| ||||||| ||| || |||||||| ||| ||||||  |  ||||||||   ||||||||||| |||||||||||||    
T  45055773 cttcaaattcctcatcgatgactacaacaacaatagtccctacttagagtctctctccctcgtctccaaacacttcctctccatca 45055858  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 459 - 600
Target Start/End: Complemental strand, 28533138 - 28532997
Alignment:
Q  459 acaacaatcgtcgctacttgtatcctctctccgctgtctccaaacaattcctctccatcatcgatcctcttcgattatcactgactgtcctcaatccaac 558  Q
    ||||||| |||||| |||||  | |||||||| | || |||||||  ||||||||||||| ||  |  || ||||| ||||| ||| || ||||||||||    
T  28533138 acaacaaccgtcgcaacttgagttctctctccaccgtatccaaacggttcctctccatcaccggacgcctccgattctcactcactctcgtcaatccaac 28533039  T
Q  559 acgccctctcatccgtcccctcttcaaaaggttcaccaatct 600  Q
    || |||| || | | |  ||||||||||||||||||| ||||    
T  28533038 accccctttcctacttagcctcttcaaaaggttcacccatct 28532997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 578 - 618
Target Start/End: Complemental strand, 30828001 - 30827961
Alignment:
Q  578 ctcttcaaaaggttcaccaatcttacctcccttaacctctc 618  Q
    ||||||||||||||||||||||| ||||||||  |||||||    
T  30828001 ctcttcaaaaggttcaccaatctcacctccctcgacctctc 30827961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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