View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15975_high_3 (Length: 294)

Name: NF15975_high_3
Description: NF15975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15975_high_3
NF15975_high_3
[»] chr4 (15 HSPs)
chr4 (19-237)||(7772845-7773079)
chr4 (19-123)||(7879140-7879246)
chr4 (19-137)||(7779120-7779237)
chr4 (67-135)||(45384085-45384153)
chr4 (26-135)||(7790813-7790924)
chr4 (171-285)||(50249738-50249844)
chr4 (76-135)||(49040384-49040444)
chr4 (186-274)||(7879331-7879424)
chr4 (66-130)||(7787475-7787540)
chr4 (67-135)||(45365274-45365343)
chr4 (52-135)||(48899530-48899615)
chr4 (171-234)||(37826024-37826088)
chr4 (55-130)||(50667113-50667188)
chr4 (76-135)||(50674655-50674715)
chr4 (241-285)||(48734356-48734400)
[»] chr1 (3 HSPs)
chr1 (67-125)||(24381868-24381927)
chr1 (86-133)||(24341215-24341263)
chr1 (86-133)||(24353580-24353628)
[»] chr7 (1 HSPs)
chr7 (171-199)||(48884815-48884843)


Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 237
Target Start/End: Complemental strand, 7773079 - 7772845
Alignment:
Q  19 gtaacctcatttgtatcatgagctattatgtaaatgagctgaaccattatgtcgtggaatgtttattggttaactatttgtcatatgctta-tggaaata 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||| ||||||||||| ||||| ||||||||    
T  7773079 gtaacctcatttgtaacatgagctattatgtaaatgagctgaatcattacgtcatggaatgtttattggttaattatttgtcataggcttattggaaata 7772980  T
Q  118 ttgacaactttgtttgtgatatgtaactcaatctgtcactgcttgaaattgtt------------ttaatctgatgagtttatacatgttgaagg---aa 202  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||   ||    
T  7772979 ttgacaactttgtttgtgatgtgtaactcaatctgtcactgcttgaaattgttttatatggtaaattaatctgatgagtttatacatgttgaaggaaaaa 7772880  T
Q  203 aataaagttttgttctctaatatcagtggacttgt 237  Q
    |||||| ||||||||||||||||||||||||||||    
T  7772879 aataaatttttgttctctaatatcagtggacttgt 7772845  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 7879140 - 7879246
Alignment:
Q  19 gtaacctcatttgtatcatgagctattatgtaaatgagctgaaccattatgtcgtggaatgtttattggttaact-atttgtcatatgctta-tggaaat 116  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||| ||||| ||| | ||||| |||||||| |||||||    
T  7879140 gtaacctcatttgtaacatgagctattatgtaaatgaggtgaaccaatatgtcatggaatgtttactggttgactaaattgtcgtatgcttattggaaat 7879239  T
Q  117 attgaca 123  Q
    |||||||    
T  7879240 attgaca 7879246  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 19 - 137
Target Start/End: Complemental strand, 7779237 - 7779120
Alignment:
Q  19 gtaacctcatttgtatcatgagctattatgtaaatgagctgaaccattatgtcgtggaatgtttattggttaactatttgtcatatgctta-tggaaata 117  Q
    ||||||||||||||| ||||||||| |||||||||||| ||| |   ||| || ||||||||||||||||| |||||||||  |||||||| ||||||||    
T  7779237 gtaacctcatttgtaacatgagctagtatgtaaatgagttgacctgatatatcatggaatgtttattggttgactatttgt--tatgcttattggaaata 7779140  T
Q  118 ttgacaactttgtttgtgat 137  Q
    ||||||||||| ||||||||    
T  7779139 ttgacaactttctttgtgat 7779120  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 45384153 - 45384085
Alignment:
Q  67 atgtcgtggaatgtttattggttaactatttgtcatatgcttatggaaatattgacaactttgtttgtg 135  Q
    ||||| || ||||| ||||||||||| |||||| |||||||||| ||||||||||||||| ||||||||    
T  45384153 atgtcatgcaatgtctattggttaacaatttgtaatatgcttattgaaatattgacaactctgtttgtg 45384085  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 135
Target Start/End: Original strand, 7790813 - 7790924
Alignment:
Q  26 catttgtatcatgagctattatgtaa-atgagctgaaccattatgtcgtggaatgtttattggttaactatttgtcatatgctta-tggaaatattgaca 123  Q
    |||||||| ||||||||| ||||||| ||||||||||||   || || || | | ||||||||||||| ||||||||||||| || |||||||||||||     
T  7790813 catttgtaacatgagctagtatgtaacatgagctgaacccacatttcatgaagtatttattggttaacgatttgtcatatgcatattggaaatattgact 7790912  T
Q  124 actttgtttgtg 135  Q
     |||||||||||    
T  7790913 gctttgtttgtg 7790924  T

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Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 285
Target Start/End: Complemental strand, 50249844 - 50249738
Alignment:
Q  171 ttaatctgatgagtttatacatgttgaaggaaaataaagttttgttctctaatatcagtggacttgtcattctatt-aactttggcccttgccaattctc 269  Q
    |||||||||||||||||| ||| ||||||||||  || ||||||||||||||| |||||||||       |||||| ||||||||||||||||| || ||    
T  50249844 ttaatctgatgagtttatgcatattgaaggaaa--aaggttttgttctctaatttcagtggac-------tctattaaactttggcccttgccatttatc 50249754  T
Q  270 tgttttaaatcaggaa 285  Q
    ||||| ||| ||||||    
T  50249753 tgtttcaaaccaggaa 50249738  T

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Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 49040444 - 49040384
Alignment:
Q  76 aatgtttattggttaactatttgtcatatgctta-tggaaatattgacaactttgtttgtg 135  Q
    ||||| |||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||    
T  49040444 aatgtatattggttaactatctgtaatatgcttattggtaatattgacaactttgtttgtg 49040384  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 274
Target Start/End: Original strand, 7879331 - 7879424
Alignment:
Q  186 tatacatgttgaaggaaaa--taaagttttgtt--ctctaatatcagtggact-tgtcattctattaactttggcccttgccaattctctgttt 274  Q
    |||||||||||||||||||  ||||||||| ||  ||||||||| |||||  | |||||||||| ||||||||||||||| || ||||||||||    
T  7879331 tatacatgttgaaggaaaaaataaagttttttttgctctaatattagtggcttctgtcattctactaactttggcccttgtcatttctctgttt 7879424  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 130
Target Start/End: Original strand, 7787475 - 7787540
Alignment:
Q  66 tatgtcgtggaatgtttattggttaactatttgtcatatgcttat-ggaaatattgacaactttgt 130  Q
    |||||| || |||||||||| ||| ||| |||||||||||||||| | ||||||||||||||||||    
T  7787475 tatgtcatgaaatgtttattcgtttactgtttgtcatatgcttatcgaaaatattgacaactttgt 7787540  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 45365343 - 45365274
Alignment:
Q  67 atgtcgtggaatgtttattggttaactatttgtcatatgctta-tggaaatattgacaactttgtttgtg 135  Q
    ||||| || ||||||||||||||||| |||||| ||||||||| |||||| ||||| | |||||||||||    
T  45365343 atgtcatgcaatgtttattggttaacaatttgtaatatgcttattggaaacattgatatctttgtttgtg 45365274  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 135
Target Start/End: Original strand, 48899530 - 48899615
Alignment:
Q  52 atgagctgaaccattatgtcgtggaatgtttattggttaacta-tttgtcatatgctta-tggaaatattgacaactttgtttgtg 135  Q
    ||||||||| ||| |||||| || ||||||||||| || |||| ||||  ||||||||| |||||||||||||| |||||||||||    
T  48899530 atgagctgatccaatatgtcatgaaatgtttattgtttcactattttgcaatatgcttattggaaatattgacagctttgtttgtg 48899615  T

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Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 234
Target Start/End: Complemental strand, 37826088 - 37826024
Alignment:
Q  171 ttaatctgatgagtttatacatgttgaaggaaaa-taaagttttgttctctaatatcagtggact 234  Q
    ||||| ||||||| |||| ||| ||||||||||| ||| ||||||||||||||| ||||||||||    
T  37826088 ttaatttgatgaggttatgcatattgaaggaaaaataaggttttgttctctaatttcagtggact 37826024  T

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Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 130
Target Start/End: Original strand, 50667113 - 50667188
Alignment:
Q  55 agctgaaccattatgtcgtggaatgtttattggttaactatttgtcatatgcttatgga-aatattgacaactttgt 130  Q
    |||||| |||||||||| || ||  |||||||||||||| ||||| |||||||||| || |||||||||||||||||    
T  50667113 agctgatccattatgtcatgaaacatttattggttaact-tttgtaatatgcttattgagaatattgacaactttgt 50667188  T

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Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 135
Target Start/End: Original strand, 50674655 - 50674715
Alignment:
Q  76 aatgtttattggttaactatttgtcatatgcttat-ggaaatattgacaactttgtttgtg 135  Q
    |||||||||| |||||||| |||  |||||||||| ||||||||||||| |||||||||||    
T  50674655 aatgtttatttgttaactagttgcaatatgcttattggaaatattgacagctttgtttgtg 50674715  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 48734400 - 48734356
Alignment:
Q  241 tctattaactttggcccttgccaattctctgttttaaatcaggaa 285  Q
    |||||||||||| |||||||||| |||||||||| ||| ||||||    
T  48734400 tctattaactttagcccttgccatttctctgtttcaaaccaggaa 48734356  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 24381868 - 24381927
Alignment:
Q  67 atgtcgtggaatgtttattggttaactatttgtcatatgctta-tggaaatattgacaac 125  Q
    ||||| || |||||||||||||||||||||||| | ||| ||| ||||||||||||||||    
T  24381868 atgtcatgaaatgtttattggttaactatttgtaacatgtttattggaaatattgacaac 24381927  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 24341215 - 24341263
Alignment:
Q  86 ggttaactatttgtcatatgcttat-ggaaatattgacaactttgtttg 133  Q
    |||||||||||||| ||||| |||| ||||||||| |||||||||||||    
T  24341215 ggttaactatttgtaatatgtttattggaaatattaacaactttgtttg 24341263  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 24353580 - 24353628
Alignment:
Q  86 ggttaactatttgtcatatgcttat-ggaaatattgacaactttgtttg 133  Q
    |||||||||||||| ||||| |||| ||||||||| |||||||||||||    
T  24353580 ggttaactatttgtaatatgtttattggaaatattaacaactttgtttg 24353628  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 199
Target Start/End: Original strand, 48884815 - 48884843
Alignment:
Q  171 ttaatctgatgagtttatacatgttgaag 199  Q
    |||||||||||||||||||||||||||||    
T  48884815 ttaatctgatgagtttatacatgttgaag 48884843  T

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