View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15975_low_1 (Length: 451)
Name: NF15975_low_1
Description: NF15975
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15975_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 12478718 - 12478855
Alignment:
| Q |
1 |
aatgaatatgaagggaactgcaatgttgatattcaacctagggagagtattgataaatttgttgacatcacaaaagaagggagtttggcatttgacctga |
100 |
Q |
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| T |
12478718 |
aatgaagatgaagggaactgcaatgttgatattcaacctagggagagtactgataaatctgttgacatcacaaaagaagggactttgacatctgacctga |
12478817 |
T |
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| Q |
101 |
atgttcacagcagcatcgccagactcgctaatgatgca |
138 |
Q |
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| T |
12478818 |
atgttcacagaagtatccccagactcgctaatgatgca |
12478855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 30607825 - 30607962
Alignment:
| Q |
1 |
aatgaatatgaagggaactgcaatgttgatattcaacctagggagagtattgataaatttgttgacatcacaaaagaagggagtttggcatttgacctga |
100 |
Q |
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|||||| |||||||||||||||||| |||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
30607825 |
aatgaagatgaagggaactgcaatgctgatattcaacccagggagagtactgataaatccaaagacatcacaaaagaagggactttggcatctgacctga |
30607924 |
T |
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| Q |
101 |
atgttcacagcagcatcgccagactcgctaatgatgca |
138 |
Q |
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| T |
30607925 |
atgttcacagaagcatccccagactcactaacgatgca |
30607962 |
T |
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